Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1535 ATGGTATCCCCCGAAAATCCCAATTGGTTGTTTGATTATGGTTTGATCGACGACATCCCTGTACCGGATGCGAATTTCCCGGTCACGAGTTCAAGCTTCTCCTGGGCTATTCAGCCCTTTAACGGCATCCATGATACCGGTGTGGAAATTGAGGGATCATTGGCAGATCTGGATGACCGTCTAGAATCTGGCTCAAAAAAGAGGGTCAGATCTGATTCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGGGATAGGCTCAATGACAAGTTTCTGGAACTGGGCTCCATTTTGGATCCTGGAAGACCGCCCAAAACTGACAAGGCTGCAATTTTAGTTGACGCGGTTCGAATGGTGAATCAGTTGCGTAGCGAAACACAGAAACTAAAGGAATCAAATTCAAGTCTCCAGGAGAAGATTAAAGAGTTGAAGGCCGAGAAGAACGAGCTTCGTGACGAGAAGCAGAGGCTCAAGGCAGATAAGGAGAGGCTAGAGCAGCAAGTCAAGTCCATGCCTGCTCAACAACCGGGCTTCTTACCTCCACCAATCCCCACATTTGCTGCTCAGGGTCAAGCTCCTGGCAATAAGTTAGTTCCTTTCATTGGTTACCACCCAAGTGTTGCCATGTGGCAGTTCATGCCACCTGCTGCGGTGGACACGTCACAGGACCACGTACTCCGGCCACCCGTCGCATAA 708 49.44 MVSPENPNWLFDYGLIDDIPVPDANFPVTSSSFSWAIQPFNGIHDTGVEIEGSLADLDDRLESGSKKRVRSDSCSASSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAILVDAVRMVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSMPAQQPGFLPPPIPTFAAQGQAPGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24033478 24035799 - CmPI595203_05g015350.1 Cmu05g1535 416449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1535 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 146 IPR036638 GO:0046983(InterPro)
Cmu05g1535 235 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983(InterPro)
Cmu05g1535 235 Gene3D - 65 124 IPR036638 GO:0046983(InterPro)
Cmu05g1535 235 FunFam Transcription factor bHLH34 66 124 - -
Cmu05g1535 235 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 179 - -
Cmu05g1535 235 CDD bHLH_AtILR3_like 83 155 - -
Cmu05g1535 235 CDD bZIP 141 173 - -
Cmu05g1535 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
Cmu05g1535 235 Coils Coil 123 178 - -
Cmu05g1535 235 PANTHER BHLH TRANSCRIPTION FACTOR 8 235 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Cmu05g1535 235 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0850 Cmu-Chr2:10248634 Cmu05g1535 Cmu-Chr5:24033478 2.30E-55 dispersed
Cmu01g1971 Cmu-Chr1:32996250 Cmu05g1535 Cmu-Chr5:24033478 1.10E-09 transposed
Cmu02g1136 Cmu-Chr2:23524227 Cmu05g1535 Cmu-Chr5:24033478 6.20E-10 transposed
Cmu05g0468 Cmu-Chr5:3941868 Cmu05g1535 Cmu-Chr5:24033478 5.10E-30 transposed
Cmu10g1383 Cmu-Chr10:6867646 Cmu05g1535 Cmu-Chr5:24033478 5.50E-78 wgd
Cmu03g1114 Cmu-Chr3:5544064 Cmu05g1535 Cmu-Chr5:24033478 1.60E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6200 PF00010 HLH 1.10E-09 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1535 - - - 0.0