Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1541 ATGCCAACAGTTTGGTTTTCTCTGAAAAAGTCCTTCCCTTGCAAGCCAGAGCCATCAGAAGTCTATGATCCAAAGTGCAGGAAACAACTCAACACAATCACAACTAAGAAAGCATCCAGAAAGTCAGGTTGTTCTTCTGGAAGGTCTGGTTGTTCAAGGTCCATAGCAAATCTCAAAGATGTCATCCATGGAAGCAAGAGGCACATGGAAAAACCACCGATTTGCAGCCCGAGGTCGATCGGTAGCAGCGAGTTCCTCAACCCAATTGCTCATGAAGTCATACTGAGCAACTCAAAGTGTGAGCTCAAGATTACTGGTTTTGGAAGCTTCCACCAAGAGGGTGTAGGAAATGCTGGCTCTGGAGGGGGAGCAGGTGGGAACTCGCCATTTTCCGGTACACTAAGACCCGGAACTCCTGGTCCAGGGGAGCACTTTGTTAACAACTCCAGTTCTCCTTTTAGTACTACCTCCATATCTGCTGCAAGAAAGCTTCCTTCTCTTAGAGATGGGCCTGCGGCTGGGAGTACTGCTAAATCTAAGGTGGGTGGGGAAATTCATACAAGCAAAAGGTTCTCCCCGCTAACCGAACTAAATGGTAATGCATTTTCGACGGTTACTTGCCATAAATGTGGAGAGCAGTTTTGCAAATTGGAGGCTGCTGAGTCTCACCATCTCTCTAAGCATGCTGTTACCGAGCTTGTGGAAGGTGATTCATCGAGGAAAATTGTCGAAATAATATGTCGAACGAACTTGTTGAAATCAGAGAACAATGGCAACCGTATCGAACGAGTCTTCAAAGTTCACAATATGCAAAAAACGTTAGCTGGATTTGAAGAATACCGGGAAATGGTGAAGATCAAGGCAAGCAAGCTTTCGAAGAAACACCCTCGATGCCTTGCGGATGGGAACGAGCTGCTGAGGTTTTACGGGACTACTTTAGGCTGCTCTCTTGGACTAAATGGCTCCTCCAGCCTCTGCATATCACAGAAATGCAATGTCTGCAGAATTATAAGGAATGGTTTCTCAGCAAAGAAGGATATGAAAGAAGAAGTAGGAGTTTTCACGACTTCGACGAGCGGAAAAGCTTTCGAAACCATTGAAACGACAGAAGAAAGCTCAGTAAAGAAAGCATTGCTAATCTGCAGAGTGATTGCAGGGAGGGTTCATAGGCCTTTGGAGAATATACAAGATATGGTTGGCCAAACAGGGTTTGATTCTCTAGCTGGCAAAGTGGGATTACATTCCAACATTGAAGAGCTTTATTTGCTCAGTCCTAGAGCTTTGCTTCCTTGTTTTATTGTAATTTGCAAGCCATGA 1317 45.03 MPTVWFSLKKSFPCKPEPSEVYDPKCRKQLNTITTKKASRKSGCSSGRSGCSRSIANLKDVIHGSKRHMEKPPICSPRSIGSSEFLNPIAHEVILSNSKCELKITGFGSFHQEGVGNAGSGGGAGGNSPFSGTLRPGTPGPGEHFVNNSSSPFSTTSISAARKLPSLRDGPAAGSTAKSKVGGEIHTSKRFSPLTELNGNAFSTVTCHKCGEQFCKLEAAESHHLSKHAVTELVEGDSSRKIVEIICRTNLLKSENNGNRIERVFKVHNMQKTLAGFEEYREMVKIKASKLSKKHPRCLADGNELLRFYGTTLGCSLGLNGSSSLCISQKCNVCRIIRNGFSAKKDMKEEVGVFTTSTSGKAFETIETTEESSVKKALLICRVIAGRVHRPLENIQDMVGQTGFDSLAGKVGLHSNIEELYLLSPRALLPCFIVICKP 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24235898 24237516 + CmPI595203_05g015410.1 Cmu05g1541 416455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1541 438 Gene3D - 235 437 - -
Cmu05g1541 438 ProSitePatterns Zinc finger C2H2 type domain signature. 207 228 IPR013087 -
Cmu05g1541 438 MobiDBLite consensus disorder prediction 143 162 - -
Cmu05g1541 438 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 437 - -
Cmu05g1541 438 FunFam C2H2-like zinc finger protein 229 437 - -
Cmu05g1541 438 MobiDBLite consensus disorder prediction 118 184 - -
Cmu05g1541 438 SUPERFAMILY ADP-ribosylation 230 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1541 Cmu-Chr5:24235898 Cmu05g1879 Cmu-Chr5:28737487 5.80E-49 dispersed
Cmu01g2183 Cmu-Chr1:34340233 Cmu05g1541 Cmu-Chr5:24235898 9.90E-61 transposed
Cmu10g1426 Cmu-Chr10:8413230 Cmu05g1541 Cmu-Chr5:24235898 1.20E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1541 - - - 0.0