Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1543 ATGCTTGACATCAAACCCAGGGAGACTTTGGCTATAAACTTGCCATTGCAACTTCATCATACCCCAAACGAAAGCGTCAACATGAACAATCCACGTGACAATCTGCTGAGAATGGTGAAGTCATTATCCCTAAAGGTAGTAACTTTGGAAAAGCAAGAATTAAATACCAACACAACCCCTTTCTTCAATAGGTTTGTGGAAACTTTAGATTACTACTTGGAAATCTTTGAGTTCATTGATGTCACTCTACCAAGGAACAATAAGAACCGCATCAATGTCGAACAACATTGTTTGGAAAAAGATATCATTAATGTCATCGCTTGCGAGGGGAGCGAATAA 339 38.94 MLDIKPRETLAINLPLQLHHTPNESVNMNNPRDNLLRMVKSLSLKVVTLEKQELNTNTTPFFNRFVETLDYYLEIFEFIDVTLPRNNKNRINVEQHCLEKDIINVIACEGSE 112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24298091 24298429 - CmPI595203_05g015430.1 Cmu05g1543 416457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1543 112 ProSiteProfiles GRAS family profile. 1 112 IPR005202 -
Cmu05g1543 112 Coils Coil 32 52 - -
Cmu05g1543 112 Pfam GRAS domain family 1 112 IPR005202 -
Cmu05g1543 112 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 112 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1543 Cmu-Chr5:24298091 Cmu10g1269 Cmu-Chr10:5590385 8.80E-34 dispersed
Cmu05g1543 Cmu-Chr5:24298091 Cmu01g1880 Cmu-Chr1:32360723 1.10E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6201 PF03514 GRAS 2.20E-35 CL0063 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1543 K27748 - csv:101216606 189.119