Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1549 ATGGCTCTCAGATCGGCGGCGGCGGCGGCTCCTCGGAGTTTGAGGCGGCTCATTACAGGTACTTCAACTCGTACTCTACCGATAATCTCCCATGCTATTCATGATTGGGAGAAACCGGAACCCAGCACGAACGCTTTCCTTTCTGGCCGCTTGTTTTCTAGCGCTTCCACTTCCAGTTTCATTCCTCCGCCGCTCCCTCCATCGGCTCAGCAGCGTGAGATGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGGCTCAGTAAACGCACTACTACTGAAAAACTTCATGAAGCCTTCGCAAAGTTTGGAGAAGTTGTTCATGCACGAGTTGTGACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGTTCCTCGATGGTTGGGTTATATTTGCTGAGTATGCGAGGCCAAGACCACCTCCCGGGAACAATGAACTGCAGAACTCTTGA 510 50.39 MALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSTNAFLSGRLFSSASTSSFIPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGNNELQNS 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24424971 24427559 - CmPI595203_05g015490.1 Cmu05g1549 416463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1549 169 SUPERFAMILY RNA-binding domain, RBD 60 162 IPR035979 GO:0003676(InterPro)
Cmu05g1549 169 FunFam RNA recognition motif-containing protein 58 169 - -
Cmu05g1549 169 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 157 IPR000504 GO:0003723(InterPro)
Cmu05g1549 169 SMART rrm1_1 80 153 IPR000504 GO:0003723(InterPro)
Cmu05g1549 169 PANTHER NUCLEOLAR PROTEIN 8 75 157 - GO:0003723(PANTHER)|GO:0005739(PANTHER)|GO:0080156(PANTHER)
Cmu05g1549 169 Gene3D - 66 169 IPR012677 -
Cmu05g1549 169 Pfam RNA recognition motif 81 147 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1549 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0877 Cmu-Chr4:23302239 Cmu05g1549 Cmu-Chr5:24424971 2.40E-23 dispersed
Cmu05g1549 Cmu-Chr5:24424971 Cmu10g2817 Cmu-Chr10:34716845 5.10E-17 dispersed
Cmu05g1549 Cmu-Chr5:24424971 Cmu06g1611 Cmu-Chr6:27333706 2.00E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g394 . . . Bda09g00380 . Bpe08g01145 . . . . Cma01g01162 Cma09g00914 . Car09g00831 Sed14g0466 Cpe06g00736 Cpe02g00740 Bhi09g01960 Tan01g4493 Cmetu08g1286 . Hepe01g1323 Mch11g1137 . . . . . . . . . . . Cone15ag1130 Lsi04g01255 . Chy04g01029 . . . . . . . Bma07g01319 Bma14g00366 . Cmo01g01216 Cmo09g00908 . . . Car16g00574 . . . . . . . . . Cla05g01553 Cam05g1661 Cec05g1666 Cco05g1706 Clacu05g1655 Cmu05g1549 Cre05g1661 . . . Cme04g00784
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005243 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 40