Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1559 ATGCTCAAAAAGACAAAAATGGCAAATGCTTCCCTAACTCTGTTTCTGTCTCTGTCTCTGTTTCTCTTCTCTTCACCGTCTGTGGCTGTTGATTTCATAATTTCCTCACAAAACCTCACCCATGGCGCCACTCTTATCTCCGCAAAAGAATTTTTTGAACTGGGTTTCTTCAGCCCAAGAAATTCCACCAACCGTTACTTGGGCATTTGGTACAAAATCATCCCAGTTCGTACAATCGTTTGGGTCGCCAACAGAGAAAACCCCATCACTAATTCTTCCGCTGCTGTCGTTCTCAAAATCAACACCACCACCAGCGATCTCCTCCTTTTTGAGAACGACGCCGTTGTTTGGGTTGGAAAATCGTTGAAACCAGTAAAAACCCCCAAACTACACCTCTTAGACAATGGAAATCTGGTGTTGAAAGACGCTGAATCAGAGAAAATTTCATGGCAAAGCTTCGATTACCCAACGGATACATTACTTCCCGGAATGAAACTCGGATGGGACTTCGAAAATAGAATCCAACGCCGATTATCCGCTTGGAAATCCTCCGATGACCCATCTCCAGGGAGTTTAACGATGGAAATGATGAACACAAACTACCCAGAACCAGCGATGTGGAATGGGTCGAAAGAGTTCATGAGAAGCGGACCATGGAACGGCCTTCAATTCAGCGCAAAACCCACATCGGCTTTACCCATTTTAGTGTACAGCTATGTAAACAACAAATCCGAGCTTACTTACAGCTACGAGCTCATAAACTCTTCGTTAATCGGAAGAATGGTGTTGAATCAAACGCTATTCAGAAGAGAAGCTTGGTTATGGTCTGCATCGGAGAATATTTGGAAGCTGTATGCGACTATGCCGAGGGATTACTGCGATACTTACGGACTTTGTGGTGCGTTTGGGAGCTGTGACATTGAGCAAGTGCCTGCTTGTCAATGTCTAAGAGGGTTTCATCCTAAAGTACAAGAGAAATGGAATTTGATGGATTATACTGAAGGGTGTGTGAGGAATAAGGCTTTGAATTGTTCTGATAAAACTGGGTTTGCAAAGCTTCCGGGGTTGAAATTGCCTGATACAAAGCAGTCTTGGGTTAATGAAAGTATGAGTTTGAATGAATGTAGAGATAAGTGTTTGAGGAATTGTTCTTGTGTGGCGTTTGCTAATACTGATATTAGAGGACCAGGGAGTGGTTGTGCTATTTGGTTTGGGGATCTTGTTGATATCAAAGTTGTTCGAAAAGGAGGCCAGGATTTGTATGTTAGAATGTTGGCTTCTGAATTGGAGACAAAGAAGACGAGTTCGGTTGTCATCGGCGTTATCGTCGGAGCGGCGATTCTGGCGATTGCTGGTCTGGCTTTGATTGGGTTTTACCTTATCAGAAGCAGGAGGAGAAGTCTCGAAGGTGTAGGCAAGGATCTGGAAGGGCAAGAAGAAGATTTGGAGCTCCCAATAGTCGACTTAACGACAATATCTAATGCCACAGACAATTTTTCGAACTCCAACAAGCTTGGAGAAGGTGGTTTTGGTGCAGTCTTTCGGGGTAGACTTGGAGATGGACAAGAAATTGCAGTTAAGAGACTTTCTAGCTATTCAAGACAAGGGACTGATGAATTCAAGAATGAAGTGATACTCATTGCCAAACTTCAACATAGAAATCTTGTAAAACTTTTGGGTTGTTGCATACAAGGAGAGGAAAAGATGTTGATTTATGAGTACATGCCTAATAAGAGTTTGGACTCCTTCATTTTTGATCCTGCTAGAAAGAAGCTTTTGGATTGGTCGAAAAGATTCAATATCATATGCGGAATAGCTCGAGGGATTCTTTACCTTCATCAAGATTCGAGATTGAGGATTATACATAGAGATTTAAAAGCAAGCAATGTCTTGCTTGATATTGACATGAATCCAAAAATCTCGGATTTTGGAATGGCTAGAACGTTTGGAGGGGACCAAACCGAAGGAAATACTAGGAGAGTGGTCGGAACATATGGGTATATGGCACCAGAGTACGCCATTGATGGGCAATTTTCCATCAAGTCAGACGTCTTCAGTTTTGGAATATTATTGTTGGAAATCATAAGTGGAGAGAAGAATAGAGGGTTTTTTCGTCCTAACCATGCTCTGAACCTGATTGGACATGCATGGAAGTTATGGAATGAAGGGAAGCCATTAGAGTTGATTGATGCAACCATTGGAGAATCTTATGCTCTATCTGAAGTGTTGAGATGCATTCATGTTAGCCTCTTGTGCTTGCAACAACTTCCCGAGGATAGACCAACCATGTCAAATGTAGTTCTAATGCTAAGTAGTGAGAGCTCATTGCCACAACCAAAACAACCAGGATTTTACATGGAAAGAGATTCTCTGGAAGCATTTTCTCTTGATGGCAAGAATGAATCTTCTACTACCAATGAATTAACTATTACCCTCTTGGAGGCTAGATAA 2451 42.11 MLKKTKMANASLTLFLSLSLFLFSSPSVAVDFIISSQNLTHGATLISAKEFFELGFFSPRNSTNRYLGIWYKIIPVRTIVWVANRENPITNSSAAVVLKINTTTSDLLLFENDAVVWVGKSLKPVKTPKLHLLDNGNLVLKDAESEKISWQSFDYPTDTLLPGMKLGWDFENRIQRRLSAWKSSDDPSPGSLTMEMMNTNYPEPAMWNGSKEFMRSGPWNGLQFSAKPTSALPILVYSYVNNKSELTYSYELINSSLIGRMVLNQTLFRREAWLWSASENIWKLYATMPRDYCDTYGLCGAFGSCDIEQVPACQCLRGFHPKVQEKWNLMDYTEGCVRNKALNCSDKTGFAKLPGLKLPDTKQSWVNESMSLNECRDKCLRNCSCVAFANTDIRGPGSGCAIWFGDLVDIKVVRKGGQDLYVRMLASELETKKTSSVVIGVIVGAAILAIAGLALIGFYLIRSRRRSLEGVGKDLEGQEEDLELPIVDLTTISNATDNFSNSNKLGEGGFGAVFRGRLGDGQEIAVKRLSSYSRQGTDEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLIYEYMPNKSLDSFIFDPARKKLLDWSKRFNIICGIARGILYLHQDSRLRIIHRDLKASNVLLDIDMNPKISDFGMARTFGGDQTEGNTRRVVGTYGYMAPEYAIDGQFSIKSDVFSFGILLLEIISGEKNRGFFRPNHALNLIGHAWKLWNEGKPLELIDATIGESYALSEVLRCIHVSLLCLQQLPEDRPTMSNVVLMLSSESSLPQPKQPGFYMERDSLEAFSLDGKNESSTTNELTITLLEAR 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24840014 24844210 - CmPI595203_05g015590.1 Cmu05g1559 416473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1559 816 Pfam Protein tyrosine and serine/threonine kinase 502 767 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1559 816 ProSitePatterns Protein kinases ATP-binding region signature. 505 527 IPR017441 GO:0005524(InterPro)
Cmu05g1559 816 Pfam PAN-like domain 344 410 IPR003609 -
Cmu05g1559 816 CDD PAN_AP_plant 342 423 - -
Cmu05g1559 816 Gene3D - 27 153 IPR036426 -
Cmu05g1559 816 Gene3D Transferase(Phosphotransferase) domain 1 575 781 - -
Cmu05g1559 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 575 778 - -
Cmu05g1559 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 187 IPR036426 -
Cmu05g1559 816 SMART ntp_6 345 424 IPR003609 -
Cmu05g1559 816 SMART blect_4 36 156 IPR001480 -
Cmu05g1559 816 ProSiteProfiles Bulb-type lectin domain profile. 30 153 IPR001480 -
Cmu05g1559 816 Pfam Domain of unknown function (DUF3403) 771 816 IPR021820 GO:0004674(InterPro)
Cmu05g1559 816 SMART serkin_6 499 770 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1559 816 Pfam D-mannose binding lectin 78 182 IPR001480 -
Cmu05g1559 816 SUPERFAMILY Protein kinase-like (PK-like) 484 770 IPR011009 -
Cmu05g1559 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1559 816 ProSiteProfiles Protein kinase domain profile. 499 776 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1559 816 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 30 784 - -
Cmu05g1559 816 Gene3D Phosphorylase Kinase; domain 1 470 574 - -
Cmu05g1559 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 343 424 - -
Cmu05g1559 816 Gene3D Hepatocyte Growth Factor 340 425 - -
Cmu05g1559 816 Pfam S-locus glycoprotein domain 215 322 IPR000858 GO:0048544(InterPro)
Cmu05g1559 816 CDD STKc_IRAK 505 770 - -
Cmu05g1559 816 PIRSF SRK 3 816 IPR024171 GO:0004674(InterPro)
Cmu05g1559 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 464 574 - -
Cmu05g1559 816 CDD B_lectin 39 156 IPR001480 -
Cmu05g1559 816 ProSiteProfiles PAN/Apple domain profile. 344 425 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0146 Cmu-Chr2:1512682 Cmu05g1559 Cmu-Chr5:24840014 8.80E-139 dispersed
Cmu03g1112 Cmu-Chr3:5528456 Cmu05g1559 Cmu-Chr5:24840014 6.20E-103 dispersed
Cmu03g1113 Cmu-Chr3:5536887 Cmu05g1559 Cmu-Chr5:24840014 5.80E-93 dispersed
Cmu03g1135 Cmu-Chr3:5783221 Cmu05g1559 Cmu-Chr5:24840014 2.40E-206 dispersed
Cmu04g1149 Cmu-Chr4:26047410 Cmu05g1559 Cmu-Chr5:24840014 2.40E-94 dispersed
Cmu05g1559 Cmu-Chr5:24840014 Cmu10g1428 Cmu-Chr10:8440837 7.30E-271 dispersed
Cmu09g0244 Cmu-Chr9:2523868 Cmu05g1559 Cmu-Chr5:24840014 3.30E-38 transposed
Cmu09g0245 Cmu-Chr9:2524808 Cmu05g1559 Cmu-Chr5:24840014 8.80E-67 transposed
Cmu03g1132 Cmu-Chr3:5749548 Cmu05g1559 Cmu-Chr5:24840014 9.90E-186 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75539 PF07714 PK_Tyr_Ser-Thr 4.00E-48 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1559 - - - 0.0