Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1567 ATGGCGGACTACGGCGGCCACAATCTGGAAGTGGATCCAAGAAGCGGCTTCTGCAAATCCACAAAAATCTTCCACAGCAAACGCCGCCCAATCCCACTTCCCCCTAACCAATCCCTCGATGCGACGACCTTTATCTCTTCCCGCCCTCACAACGGCAAAATCGCCCTCATCGACGCCACCACCGGCCAACAAATCACCTATTCCCACCTCTGGAACTCCGTCGACGCCGTAGCCTCTTCCCTTTCCGACATGGGCATCCGAAAAGGCCACGTCATCCTCCTCCTTTCCCCTAACTCCATTTACTTTCCCATTATTTGCCTCGCCGTCATGTCCATCGGCGCCGTCATCACCACCACAAATCCCCTCAACACCCCTCAAGAAATCGCCAAACAAATCGCCGATTCCAAACCCATTTTAGCCTTCACTACCCAACAACTAATCCCCAAAATCGCCGCTTCCAAATTGCCAATCGTCATAATCGACGGTCAAGTTCCAAAATCCCCAGTCAAAATCGTGTCGACATTGAGCGAAATGATGAGGGAAAAACCAAGTGAGAGTCGAATTAAGGAACGCGTGGAGCAAAACGACACAGCGACTCTGCTTTATTCATCTGGAACGACAGGGGCGAGCAAAGGCGTAGTGTCGTCTCACAAGAATTTAATTGCAATGGTTCAAGTGGTTGTGACGAGGTTCAAATTAAGCGAAGGGGAAGGGACTTTTATTTGTACGGTCCCAATGTTTCATATTTACGGCCTTGTGGCTTTCGCTACGGGGTTGCTCTCTTCGGGATCTACAATCGTTGTATTATCGAAATTTGAGATTCATGAAATGTTGTCGGCGATTGACAAGTACAAGGCCACGTATCTGCCTCTTGTGCCGCCGATTCTGGTGGCGCTCGTGAACGCCGCCGACCAGATAAAGGGCAAGTACGATTTGGGGTCGTTGCACACGGCGTTGTCCGGCGGAGCGCCGCTTGGGAAGGAGGTGATTGAGGGTTTTGTTGAGAAATATCCGAATGTCGCAATTCTTCAGGGTTATGGATTGACGGAATCCACCGGAATTGGGGCGTCCACCGATTCGCTGGAGGAGAGCCGCCGATACGGCACGGCGGGGCTTCTGTCGCCGAGCACTGAGGGCATGATTGTTGACCCGGAAACCGGCGAGGCTCTTCCCGTGAACCGGACCGGAGAACTTTGGCTTAGAGGGCCCACCGTAATGAAAGGGTACTTTGGTAACACGGAGGCCACAACCTCAACACTTGATTCAGAGGGATGGTTGAGAACCGGTGATCTGTGTTATATTGATGAAGATGGTTTTATTTTTGTAGTTGATAGGCTGAAGGAACTAATCAAATATAAGGGATACCAGGTGCCTCCTGCTGAATTAGAGGCGTTGTTGCTTACTCATCCTAGTATCTCCGATGCAGCTGTGATTCCATATCCAGACAAAGAGGTTGGACAGTATCCGATGGCTTATGTGGTAAGGAAGGGTGGAAGCGACATTTCACATGAAGATGTAATGCAATTTGTGGCAAAACAGGTGGCGCCGTACAAAAGAATCCGGCGGGTGGCGTTCGTGGGTTCCATTCCCAAGAATCCGTCCGGCAAGATTCTTAGAAAGGATCTCATAAAGCTCGCAACCTCCAAACTGTGA 1653 50.64 MADYGGHNLEVDPRSGFCKSTKIFHSKRRPIPLPPNQSLDATTFISSRPHNGKIALIDATTGQQITYSHLWNSVDAVASSLSDMGIRKGHVILLLSPNSIYFPIICLAVMSIGAVITTTNPLNTPQEIAKQIADSKPILAFTTQQLIPKIAASKLPIVIIDGQVPKSPVKIVSTLSEMMREKPSESRIKERVEQNDTATLLYSSGTTGASKGVVSSHKNLIAMVQVVVTRFKLSEGEGTFICTVPMFHIYGLVAFATGLLSSGSTIVVLSKFEIHEMLSAIDKYKATYLPLVPPILVALVNAADQIKGKYDLGSLHTALSGGAPLGKEVIEGFVEKYPNVAILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPSTEGMIVDPETGEALPVNRTGELWLRGPTVMKGYFGNTEATTSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPSISDAAVIPYPDKEVGQYPMAYVVRKGGSDISHEDVMQFVAKQVAPYKRIRRVAFVGSIPKNPSGKILRKDLIKLATSKL 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25049289 25054771 + CmPI595203_05g015670.1 Cmu05g1567 416481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1567 550 Pfam AMP-binding enzyme C-terminal domain 461 536 IPR025110 -
Cmu05g1567 550 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Cmu05g1567 550 FunFam Long-chain-fatty-acid--CoA ligase FadD 25 447 - -
Cmu05g1567 550 Pfam AMP-binding enzyme 50 410 IPR000873 -
Cmu05g1567 550 SUPERFAMILY Acetyl-CoA synthetase-like 44 548 - -
Cmu05g1567 550 CDD 4CL 33 542 - -
Cmu05g1567 550 Gene3D - 21 447 IPR042099 -
Cmu05g1567 550 Gene3D - 448 549 IPR045851 -
Cmu05g1567 550 FunFam 4-coumarate--CoA ligase 2 448 549 - -
Cmu05g1567 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 17 542 - GO:0005777(PANTHER)|GO:0016405(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0962 Cmu-Chr3:4245821 Cmu05g1567 Cmu-Chr5:25049289 1.00E-124 dispersed
Cmu03g0963 Cmu-Chr3:4255927 Cmu05g1567 Cmu-Chr5:25049289 3.90E-135 dispersed
Cmu05g1567 Cmu-Chr5:25049289 Cmu05g2194 Cmu-Chr5:31396677 7.40E-126 dispersed
Cmu05g1567 Cmu-Chr5:25049289 Cmu06g1391 Cmu-Chr6:25068067 2.90E-98 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1567 K10526 - csv:101221396 1010.36