Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1580 ATGGCTATGGATGATACCGAGAGCTGTAGTAGTAGACCGGCGGATGATTTTTCGGCTCAGACTTGGAGACAGAAGCAGAAGGTTGGTGTTTACGACGAAGTTCTTCGTCGACTCAGGCTGTCGCACGAAGCGGAGACCTGCCTTCCTGGTTTCGAGGATGAACTTTGGACTCATTTTCATCGACTTCCTTCTAGGTATGCTATGGACGTCAACGTAGAGAGGGCTGAAGATGTTCTCATGCACAAAAATCTTCTCTACATGGCACATGATCCTGCTACTCGACCAGCTATTGATGTCCGTCTCGTACAGGTTCATTCATCTCCTGGCAGAAACTTTGGCAAGTCCGTTCATTCAAACTTGAAGGAAAAAGTAAACCAGCGGTTTTCTGGTTATGACAGCAATCAGAGACATCACCCCCCACCAGCATTTGGTTCAACAACAGAGGTCGAATATAGTTTTGACACCAACCAATTACATGATATAGACCAACCTGGCATTTTCTCCTGGCCAATGCATGAAATTACAATATCAACAATTGACAAGCCAAAACTGCTCAGTCAGTTGACGTCCTTACTTTCTGAGATTGGGCTGAATATTCAAGAAGCGCATGCTTTTTCAACAACAGATGGCTTTTCCTTGGATGTTTTTGTAGTTGATGGTTGGGCAATTGAGGATACCAAGCAGCTAAAAGATATACTCGCAGACGAAATATCAAAGATTCAGAAAAGGCATCCTCTATTTACACCTTGCATCTTCCGTACTGGGAAGCAAGACAAAATTGGAATCCAGTTCATCACAAAGTATGTCAACATTCCAAGGGACGAAGTTGATGAATGGGAAATTGATGCAACCCTGCTAGTCTTTGAGAAGAAAATTGCGTCTGGATCTCTTAGTGACTTGTATAAAGGCACCTTCTATGGTCAAGATGTGGCTATTAAGGTTCTAAAAGATGACAACTTGAACGAGACTGTACGGCGGGAATTTGCTCAAGAAATTCATATCATGAGAAAACTTCGGCATAAGAATGTTGTCCAATTTATTGGTGCATCTACCAGGCCTCCACACTTTTTCATTGTTACAGAATACATGTCTGGTGGAAGCATACACGACTTTTTACATCAACAAAAGGGTGTTCTTAGTTTTCCTTCCTTACTAAGAGTGGCAGTTGACGTGTCCAAGGGAATGAACTATTTGCATCAAAAGAATATCATTCATAGAGATCTGAAAGCTGCAAATCTTTTGATGGATGAAGATGGGGTTGTCAAGGTAGCTGATTTTGGTGTTGCTAGAGTGCAAGCTCAATCTGGTGTGATGACTGCAGAAACTGGAACATATCGTTGGATGGCTCCAGAGGTTATTGAGCACAGACCATATGATCGTAAAGCTGATGTTTATAGCTTTGGGATAGTGTTGTGGGAGCTGCTTACAGGACAGCTGCCTTATGAGAACTTGACTCCGTTACAAGCAGCAATTGGCGTGGTCCAGAAGGGTCTGAGGCCTAAGATTCCGAGGTATGCTCATCCAATGATCGTGGATTTGCTCAAGAAATGCTGGCTGCAGGATCCATCTTTGAGACCCGAATTCTCAGAAATTACGAGACTTCTACAGCAGACATTGCTGAAGGAGGCACTTCACGTTCCTGGAACAGATTATATAATAAGAAACTTGGGAGTGACAGGTACCATCTGGAAGATGATAAAAAAATTTGGGCTGGAGAGGACGTTCTATGGAGGAGCAAGGATACGGTATCTAACTACTTTCTAA 1764 43.03 MAMDDTESCSSRPADDFSAQTWRQKQKVGVYDEVLRRLRLSHEAETCLPGFEDELWTHFHRLPSRYAMDVNVERAEDVLMHKNLLYMAHDPATRPAIDVRLVQVHSSPGRNFGKSVHSNLKEKVNQRFSGYDSNQRHHPPPAFGSTTEVEYSFDTNQLHDIDQPGIFSWPMHEITISTIDKPKLLSQLTSLLSEIGLNIQEAHAFSTTDGFSLDVFVVDGWAIEDTKQLKDILADEISKIQKRHPLFTPCIFRTGKQDKIGIQFITKYVNIPRDEVDEWEIDATLLVFEKKIASGSLSDLYKGTFYGQDVAIKVLKDDNLNETVRREFAQEIHIMRKLRHKNVVQFIGASTRPPHFFIVTEYMSGGSIHDFLHQQKGVLSFPSLLRVAVDVSKGMNYLHQKNIIHRDLKAANLLMDEDGVVKVADFGVARVQAQSGVMTAETGTYRWMAPEVIEHRPYDRKADVYSFGIVLWELLTGQLPYENLTPLQAAIGVVQKGLRPKIPRYAHPMIVDLLKKCWLQDPSLRPEFSEITRLLQQTLLKEALHVPGTDYIIRNLGVTGTIWKMIKKFGLERTFYGGARIRYLTTF 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25295748 25302020 - CmPI595203_05g015800.1 Cmu05g1580 416494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1580 587 Coils Coil 223 243 - -
Cmu05g1580 587 SUPERFAMILY ACT-like 171 238 IPR045865 -
Cmu05g1580 587 FunFam Serine/threonine-protein kinase isoform 1 276 364 - -
Cmu05g1580 587 CDD STKc_MAP3K-like 292 535 - -
Cmu05g1580 587 SUPERFAMILY Protein kinase-like (PK-like) 267 534 IPR011009 -
Cmu05g1580 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1580 587 ProSiteProfiles Protein kinase domain profile. 286 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1580 587 Gene3D - 171 244 - -
Cmu05g1580 587 Gene3D Transferase(Phosphotransferase) domain 1 365 547 - -
Cmu05g1580 587 SMART serkin_6 286 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1580 587 Gene3D Phosphorylase Kinase; domain 1 273 364 - -
Cmu05g1580 587 PANTHER SERINE-THREONINE PROTEIN KINASE 157 539 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cmu05g1580 587 PRINTS Tyrosine kinase catalytic domain signature 397 415 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1580 587 PRINTS Tyrosine kinase catalytic domain signature 462 484 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1580 587 PRINTS Tyrosine kinase catalytic domain signature 506 528 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1580 587 PRINTS Tyrosine kinase catalytic domain signature 443 453 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1580 587 PRINTS Tyrosine kinase catalytic domain signature 360 373 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1580 587 Pfam Protein tyrosine and serine/threonine kinase 287 534 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1580 587 ProSiteProfiles ACT domain profile. 173 249 IPR002912 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0198 Cmu-Chr1:1929173 Cmu05g1580 Cmu-Chr5:25295748 5.60E-25 dispersed
Cmu03g1325 Cmu-Chr3:8388262 Cmu05g1580 Cmu-Chr5:25295748 7.30E-42 dispersed
Cmu05g0129 Cmu-Chr5:1163091 Cmu05g1580 Cmu-Chr5:25295748 1.30E-26 dispersed
Cmu05g0522 Cmu-Chr5:4461844 Cmu05g1580 Cmu-Chr5:25295748 2.60E-19 dispersed
Cmu05g1580 Cmu-Chr5:25295748 Cmu10g0888 Cmu-Chr10:942092 3.60E-179 dispersed
Cmu05g1580 Cmu-Chr5:25295748 Cmu01g1266 Cmu-Chr1:25247538 4.90E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75541 PF07714 PK_Tyr_Ser-Thr 9.50E-72 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1580 - - - 0.0