Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1582 ATGGCCGCCGTCACCTCCGCCGCCGTTGCCATCCCCTCCTTCACCGGCCTCAAGTCCGCCGGCGCCACATCAAAACCCACCGCGGCCGTCCGCGTCTCCTCCCCTGCAACCCCAAAGCTGAGCATGAGAGCATCTCTGAAGGACGTGGGCGTGGCCGTGGCAGCCACCGCCGCCACCGCCCTGCTGGCCTCAAACGCCATGGCCATCGAGATCTTGCTGGGCGGCAACGACGGATCTCTGGCGTTCGTTCCGAACGATTTCTCGGTGGCGTCGGGTGAGAAAATCGTGTTCAAGAACAACGCGGGATTCCCACACAACGTGGTGTTCGATGAGGACGAAATCCCGAGCGGAGTGGACGCGGGAAAGATCTCGATGAGTGAGGAAGATCTTCTGAATGCTCCCGGCCAGGTGTACGAAGTCCAGCTAACTGAAAAAGGAAGCTACTCTTTCTACTGTTCGCCCCATCAAGGAGCTGGAATGGTCGGAAAGGTCACCGTTAACTGA 504 59.92 MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATALLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25337158 25337661 + CmPI595203_05g015820.1 Cmu05g1582 416496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1582 167 PRINTS Plastocyanin signature 74 93 IPR002387 GO:0005507(InterPro)|GO:0009055(InterPro)
Cmu05g1582 167 PRINTS Plastocyanin signature 97 115 IPR002387 GO:0005507(InterPro)|GO:0009055(InterPro)
Cmu05g1582 167 PRINTS Plastocyanin signature 146 165 IPR002387 GO:0005507(InterPro)|GO:0009055(InterPro)
Cmu05g1582 167 PRINTS Type I copper blue protein family signature 144 158 IPR001235 GO:0005507(InterPro)|GO:0009055(InterPro)
Cmu05g1582 167 PRINTS Type I copper blue protein family signature 88 101 IPR001235 GO:0005507(InterPro)|GO:0009055(InterPro)
Cmu05g1582 167 PRINTS Type I copper blue protein family signature 103 118 IPR001235 GO:0005507(InterPro)|GO:0009055(InterPro)
Cmu05g1582 167 PANTHER PLASTOCYANIN MAJOR ISOFORM, CHLOROPLASTIC-RELATED 29 166 - GO:0009543(PANTHER)|GO:0046028(PANTHER)
Cmu05g1582 167 SUPERFAMILY Cupredoxins 66 167 IPR008972 -
Cmu05g1582 167 CDD Plastocyanin 69 167 IPR002387 GO:0005507(InterPro)|GO:0009055(InterPro)
Cmu05g1582 167 ProSitePatterns Type-1 copper (blue) proteins signature. 146 160 IPR028871 -
Cmu05g1582 167 Gene3D - 69 167 IPR008972 -
Cmu05g1582 167 Pfam Copper binding proteins, plastocyanin/azurin family 70 167 IPR000923 GO:0005507(InterPro)|GO:0009055(InterPro)
Cmu05g1582 167 NCBIfam plastocyanin 69 167 IPR002387 GO:0005507(InterPro)|GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1582 K02638 - - csv:101211484 266.929
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g157 Blo01g01613 . . . Bpe02g00333 Bpe04g00263 Bma04g00264 Bma01g02387 . . . Cma09g00082 . . . Cpe06g00046 . . . . . . . . . . . . . . . . . . . Lsi04g01781 . Chy04g00389 . . . . . . . . . . . Cmo09g00081 . . . Car09g00071 . . . . . . . . . Cla05g01595 Cam05g1706 Cec05g1706 Cco05g1762 Clacu05g1693 Cmu05g1582 Cre05g1699 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011843 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 0 1 1 1 2 1 1 30