Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1612 ATGACGATTTGGTGCTGCTTATGCTTCACCGTTGGAGAAGAAGACGAAAGGGAAAGGGAAGAGGAACTGAAGAAGGAAGGTGAAATGAAACCCATGATGCGTGAGGAGGTTTTTGAGAACCAGGATGACTCTGATCGCATTGTGCGAAATCGTGATGATTCTCAAGGGAGTAATCCACTTCCGATTGCTGTAGATGATGCGCCTGACCGTCATGACGGTGATCGACTTAGACTGTTTGAGGATATGGTCAGAGCAATGCACGATGGCGCCGATGGTGGTGGTGCTCATTGGGACGATGAGCTGCGCGGCGGCGGCGGCGGGGCTATTAATCCCTGGAATTTTTCTTTTGGAATTCTGCATCAATCTGAGGGAGGAGAAAGTAGTAGCGCCTCGGCTTTGTCCTTGTCTTCTACGGTGGAGACTTCTAATGAGGAACGCGATCGGGATGCCAACCATAAGCGCGCTAAAGTTCTCTCCAAATTCACTGAGAGCTCATTTGCAACTCCATGGCCTTTGGGTGCTGGAAATCCTATGAGAGATTATGATTTTATTCACGGATCATCTTCAATTATGAGTAGGAATGAATTTCTATACCATGCTTCTACATCATGCAGAGTTGACGAAGATTTGGAATCTAGTTTTGGTAGAGATGATGGGATCAATGATAATGACACCTGTAAATCAGAAGGATTTGAAGTAAGAATGGATCTTACAGATGATTTACTGCATATGGTGTTCTCTTTCTTGGATCACATCAATCTTTGTCGAGCTGCTATAGTCTGCAGGCAGTGGCAAGCTGCTAGTGCTCATGAAGATTTCTGGAGGTGTTTGAATTTTGAAAATAGGAACATATCCATGGAACAATTCGAGGATATGTGTGGAAGATATCCAAATGCTACAGAGGTCAATATCTCTGGTGTACCTGCCGTTCACTTGCTTGCCATGAAAGCAGTTTCTTCTTTAAGACATCTGGAGGTTTTAACTCTGGGGAGAGGACAACTGGCAGATAACTTTTTTCACGCCCTGACTGATTGCCATTTATTGAAGAGTTTGACTGTCAATGATTCTACGCTGGTTAATGTTACACAAGAGATACCTATAAGCCATGATAGACTGCGTCATCTTCATCTTACTAAATGTCGTGTTATACGCATATCTGTTAGATGTCCACAACTTGAAACATTGTCGTTGAAGCGCAGCAACATGGCACAGGCTGTTCTTAACTGCCCCCTTCTTCGGGACCTGGATATAGGCTCTTGCCACAAGCTCTCAGATGCTGCAATTCGCTCAGCCGCTATTTCATGCCCACAGTTGGAATCTCTTGATATGTCTAATTGTTCATGTGTTAGCGATGAGACATTACGTGAAATTTCTGCAAACTGCCCGAATCTCCAGCTTCTGAATGCATCATACTGCCCAAATATATCTTTGGAGTCTGTAAGACTGACAATGCTGACCGTGCTTAAGCTTCACAGCTGTGAGGGCATCACATCAGCTTCAATGACCGCAATATCTAGTAGTTCTGGTTTGAAGGTTTTGGAGCTTGATAATTGCAGTCTTTTGACTTCTGTTTCTCTGGATCTTCCCCATTTACAGAATATCAGACTTGTTCATTGCCGCAAATTCTCAGACTTGAGTTTACAGAGTGTTAAATTATCATCCATAATGGTCTCTAATTGTCCATCACTTCATCGGATCAACATCACTTCCAATTTACTTCAAAAATTGGTGTTGAAGAAACAAGAGAGCTTGGCCAAATTGGTTTTGCAGTGCCCTAGTCTGCAAGATGTGGACCTCACAGACTGTGAATCGCTAACGAATTCTATTTGTGAGGTTTTTAGTGATGGTGGTGGATGCCCTATGTTGAAATCACTTGTTCTTGATAACTGTGAGAGTCTGACTGCTGTTCGATTCTGTAGCAGTTCTTTAGGCAGTCTTTCCCTTGTTGGTTGCCGGGCAATCACTTCACTTGAACTTCAATGCCCTAATCTCGAACAGGTTTCTTTAGATGGCTGTGATCATCTTGAGAGAGCATCATTTTCCCCGGTTGGTCTGCGGTCACTAAACCTGGGAATCTGTCCCAAATTGAATGAATTAAAACTTGAGGCCCCTCGGATGGATTTACTTGAGTTAAAAGGTTGTGGTGGATTGTCTGAAGCAGCCATCAATTGTCCTCGTCTAACATCGTTGGATGCTTCCTTTTGTGGCCAACTGAAAGATGAGTGTTTGTCTGCGACTACTGCCTCATGTCCACAGATTGAGTCGTTAATACTGATGTCATGTCCATCGGTTGGTTCAGAGGGGCTTTACTCTCTGCGATGCCTTCTGAAGTTGGTTGTGCTCGATTTATCATATACCTTTTTGATGAGCTTGCAGCCAGTCTTCGAGTCTTGTATACAACTTAAGGTATTGAAACTACAAGCATGCAAGTATTTAACTGACTCATCGCTAGAGCCTCTTTATAAGGAAGACGCTCTTCCAGCTCTTCAAGAGTTAGACTTATCTTACGGGACTCTTTGTCAGTCTGCCATAGAAGAGCTTCTTGCTTGTTGCACTCACTTAACTCATGTGAGCTTAAATGGGTGTGTGAACATGCATGATCTAAATTGGGGTTGTAGCATTGGACAGCTTTCGTTGTCCAGCATCCCAATTCCTCTTGGTCAGGCCACTCTTGATGAGATTGAGGAACCAGTTGCACAGCCAAACCGTTTGTTACAGAACCTTAACTGTGTAGGTTGTCAGAATATTAGAAAGGTTCTCATTCCTCCAGCTGCTCGTTGTTTTCATTTATCATCATTAAACCTATCCTTGTCTTCAAATCTCAAGGAAGTTGACGTCTCTTGTTACAACCTATGCTTTCTTAATTTGAGTAATTGCTGCTCTTTGGAAGTTCTAAAACTTGACTGCCCGCGGTTAACCAGTCTCTTTCTTCAGTCTTGCAACATTGAAGAAGAAGTGGTTGTGGCTGCGGTATCGAGATGTAGCATGCTCGAGACGTTGGATGTCCGCTTATGTCCAAAGATCTCCTCTATTAGCATGGTACAACTGCGTATTGCTTGTCCAACCGATCTGTTTGGTTTGGGCCCTGAAGAAGCCTTCCAGTTTGTGGCTACTGGCTCTGATTGTAAGTCGAATTTCTTCTCACACCCACTTGCTTATTCTTCTTACTTCAACGGCCGTTTCTGTTTCTTGAAGCTTATGATTTCAAGTTCTTCTGTATATACTGCATTTGTTGGTTCTAGATTTGAAGATTCTCTTCTGGCAAATGTGACTGATAATCCTGCTGATAAACTAGTAGCTGTGCTTAACAAGAACAGAACTGCTAATAAGCTATCTGCTCTAAAAGACAATCCTGGCTTGGCATGCCTTGCTCTTCAGTATATTAAGGCATACCAAGGGAAATGTGAAGCAGTTGGAGGTCCCGACGGAATGAAGCCTCCAAATTCTGCATTCGTTGAAACTTTTGCTCCTAACTGTGGAGTTGTTGTCTCGTCTCTCGCTCCAATCACGGGGCGGTTGCTTGGTTGCCAGTCTAAATATGTACATGCACCTGAAGCATTTTCTGATGTTTTGATGGTGAATTACAAGAGCTTGGAAATTCTCTACTACAAGAATAACACAGAAGTTGGAGCTGCTGTGACTGGTACGGATGGGGGTTCTCCTTACTTTTGGTGTGTGTTGTTCAGCAATGGTAGCATCTCTAACAGCTTTGCCTTTGAGGGAGGAGTGGCCAAGTTAACGCGCCCCGGTTGCTACAGTGGGGCCAATGACCAGTGCAGCGGAGCCGATAGTCCGTTTTCTACCATGCGTATATTGCTATCAGCCTTGACATCTTTGCTTGCCCTGGCATATGCCTTTGGTTTATGA 3867 43.75 MTIWCCLCFTVGEEDEREREEELKKEGEMKPMMREEVFENQDDSDRIVRNRDDSQGSNPLPIAVDDAPDRHDGDRLRLFEDMVRAMHDGADGGGAHWDDELRGGGGGAINPWNFSFGILHQSEGGESSSASALSLSSTVETSNEERDRDANHKRAKVLSKFTESSFATPWPLGAGNPMRDYDFIHGSSSIMSRNEFLYHASTSCRVDEDLESSFGRDDGINDNDTCKSEGFEVRMDLTDDLLHMVFSFLDHINLCRAAIVCRQWQAASAHEDFWRCLNFENRNISMEQFEDMCGRYPNATEVNISGVPAVHLLAMKAVSSLRHLEVLTLGRGQLADNFFHALTDCHLLKSLTVNDSTLVNVTQEIPISHDRLRHLHLTKCRVIRISVRCPQLETLSLKRSNMAQAVLNCPLLRDLDIGSCHKLSDAAIRSAAISCPQLESLDMSNCSCVSDETLREISANCPNLQLLNASYCPNISLESVRLTMLTVLKLHSCEGITSASMTAISSSSGLKVLELDNCSLLTSVSLDLPHLQNIRLVHCRKFSDLSLQSVKLSSIMVSNCPSLHRINITSNLLQKLVLKKQESLAKLVLQCPSLQDVDLTDCESLTNSICEVFSDGGGCPMLKSLVLDNCESLTAVRFCSSSLGSLSLVGCRAITSLELQCPNLEQVSLDGCDHLERASFSPVGLRSLNLGICPKLNELKLEAPRMDLLELKGCGGLSEAAINCPRLTSLDASFCGQLKDECLSATTASCPQIESLILMSCPSVGSEGLYSLRCLLKLVVLDLSYTFLMSLQPVFESCIQLKVLKLQACKYLTDSSLEPLYKEDALPALQELDLSYGTLCQSAIEELLACCTHLTHVSLNGCVNMHDLNWGCSIGQLSLSSIPIPLGQATLDEIEEPVAQPNRLLQNLNCVGCQNIRKVLIPPAARCFHLSSLNLSLSSNLKEVDVSCYNLCFLNLSNCCSLEVLKLDCPRLTSLFLQSCNIEEEVVVAAVSRCSMLETLDVRLCPKISSISMVQLRIACPTDLFGLGPEEAFQFVATGSDCKSNFFSHPLAYSSYFNGRFCFLKLMISSSSVYTAFVGSRFEDSLLANVTDNPADKLVAVLNKNRTANKLSALKDNPGLACLALQYIKAYQGKCEAVGGPDGMKPPNSAFVETFAPNCGVVVSSLAPITGRLLGCQSKYVHAPEAFSDVLMVNYKSLEILYYKNNTEVGAAVTGTDGGSPYFWCVLFSNGSISNSFAFEGGVAKLTRPGCYSGANDQCSGADSPFSTMRILLSALTSLLALAYAFGL 1288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25877952 25887028 + CmPI595203_05g016120.1 Cmu05g1612 416526

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1612 1288 CDD F-box_FBXO41 239 275 - -
Cmu05g1612 1288 SMART fbox_2 237 277 IPR001810 GO:0005515(InterPro)
Cmu05g1612 1288 SMART LRR_CC_2 969 993 IPR006553 -
Cmu05g1612 1288 SMART LRR_CC_2 750 775 IPR006553 -
Cmu05g1612 1288 SMART LRR_CC_2 619 657 IPR006553 -
Cmu05g1612 1288 SMART LRR_CC_2 798 823 IPR006553 -
Cmu05g1612 1288 SMART LRR_CC_2 528 553 IPR006553 -
Cmu05g1612 1288 SMART LRR_CC_2 409 434 IPR006553 -
Cmu05g1612 1288 SMART LRR_CC_2 482 507 IPR006553 -
Cmu05g1612 1288 SMART LRR_CC_2 661 691 IPR006553 -
Cmu05g1612 1288 SMART LRR_CC_2 994 1019 IPR006553 -
Cmu05g1612 1288 SMART LRR_CC_2 461 481 IPR006553 -
Cmu05g1612 1288 SMART LRR_CC_2 851 882 IPR006553 -
Cmu05g1612 1288 SMART LRR_CC_2 724 749 IPR006553 -
Cmu05g1612 1288 SMART LRR_CC_2 591 616 IPR006553 -
Cmu05g1612 1288 SMART LRR_CC_2 435 460 IPR006553 -
Cmu05g1612 1288 MobiDBLite consensus disorder prediction 15 71 - -
Cmu05g1612 1288 SUPERFAMILY L domain-like 719 1017 - -
Cmu05g1612 1288 MobiDBLite consensus disorder prediction 123 140 - -
Cmu05g1612 1288 MobiDBLite consensus disorder prediction 15 52 - -
Cmu05g1612 1288 SUPERFAMILY F-box domain 235 284 IPR036047 GO:0005515(InterPro)
Cmu05g1612 1288 Pfam F-box-like 239 279 IPR001810 GO:0005515(InterPro)
Cmu05g1612 1288 MobiDBLite consensus disorder prediction 123 152 - -
Cmu05g1612 1288 PANTHER OS10G0396666 PROTEIN 222 1021 - -
Cmu05g1612 1288 Gene3D Ribonuclease Inhibitor 637 791 IPR032675 -
Cmu05g1612 1288 Gene3D Ribonuclease Inhibitor 481 635 IPR032675 -
Cmu05g1612 1288 Gene3D Ribonuclease Inhibitor 230 480 IPR032675 -
Cmu05g1612 1288 FunFam F-box/LRR-repeat protein 15 229 479 - -
Cmu05g1612 1288 SUPERFAMILY L domain-like 319 702 - -
Cmu05g1612 1288 Gene3D Ribonuclease Inhibitor 792 1044 IPR032675 -
Cmu05g1612 1288 FunFam F-box/LRR-repeat protein 15 791 876 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1612 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1612 Cmu-Chr5:25877952 Cmu06g0086 Cmu-Chr6:802475 6.30E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g163 . . . . Bpe02g01560 . . . . . . . Car09g00314 . . . . . . . . . . . Cla05g01627 Cam05g1736 Cec05g1744 Cco05g1801 Clacu05g1727 Cmu05g1612 Cre05g1740 . . . . Lsi04g01386 . . . . . Bda01g01347 . . . . . Sed05g1795 . Cmo09g00363 Cma09g00364 . . . . . Bhi09g03082 Tan01g3472 Cmetu07g0807 . . Mch11g0452 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42