Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1615 ATGTCCGGGGTATGCGACATTAACGGCGTCCACTTCGCCGTCGAAGGTACTGTCAGGCTCTTGATGGGCCGTGGGCCCAGCTCTGCCAGATCCTCTGGCCATCCTTATCCAATGTTCCCATTTTACCCTCGTTTTGTAACAGAGTTATGGCAGATGGGTTTTTATCTTTATCTGCCAAATAATTCATTCCTTCATGCTCTGGGTTTTCAGGTTCTTGTTACTAACCAGCCATGGAAAGTGCAACAATGTAAGATGAAGTCTACGAAGAGGGCAGCAATGGCACTTCCTGTTGAGCTTGTTGTTTTGGCTTTTCTCTTCTGTGCTACCGTTGGTGTGGTGGACTCTGATGATGGAGCAACGTTGTTGGAGATAAAGAAATCATTCAGGGACGTGGATAATGTTCTTTATGATTGGACAAGCTCACCTTCATCAGACTACTGTATGTGGAGAGGTGTCACCTGTGACAATGCCACTCTCAATGTTATCTCTCTTAATCTTTCAGGTCTCAATTTGGATGGGGAAATTTCTCCTTCAGTCGGGAACCTCAAGGGCCTGCAAACTTTGGATTTGAGGGGGAATAGTCTTTCTGGGCAAATTCCAGATGAGATTGGGGATTGCTTTTCGTTAATAAATCTGGATTTGTCGTTTAATGAGATTTATGGAGACATACCATTTTCCATTTCGAAGTTGAAGCAACTGGAAATGCTTGTTCTGAAAAATAATCGACTGATTGGGCCGATCCCATCTACTTTATCTCAGATTCCAAACTTGAAGGTCTTGGATCTGGCACAGAATAATCTTAGTGGGGAAATACCAAGACTAATTTACTGGAATGAAGTGTTGCAATATCTTGGTTTGCGTGGCAACAATTTGGTGGGCACACTATCTCCAGATATGTGTCAGCTGACTGGTTTATGGTATTTCGATGTGAGAAACAACAGTTTAACTGGCGGCATACCCCAAACCATAGGCAACTGCACAGCCTTCCAGGTCTTGGACTTGTCATACAATCATCTCACTGGAGAGATACCATTTAACATTGGTTTCCTTCAAGTAGCCACGTTGTCCTTACAGGGTAATCAGCTATCAGGTCCCATTCCACCCGTAATTGGTCTGATGCAGGCGCTTGCTGTGCTAGATTTGAGTTGCAACATGTTAACTGGTCCAATCCCCTCTATCTTAGGGAATCTGACATATACCGAGAAGCTGTACTTGCATAGTAACAAGCTCACTGGGCCCATTCCAGCAGAGCTTGGGAATATGACGAAGCTCCATTATCTGGAACTGAATGATAATCATCTTACTGGGAATATTCCAGCTGAGCTTGGAAAACTCACCGATTTATTTGATCTAAATGTTGCTAATAACAATCTCGGAGGGCCTATCCCTGACAATCTTAGCTCTTGCACAAATCTCAACAGCCTAAATGTGCATGGCAACAAGTTGAATGGAACTATTCCCCCGTCTTTCCAGAGGCTAGAGAGTATGACTTACTTGAATCTCTCCACGAATGATCTACAAGGTCCTATTCCAGTTGAGCTGTCTCGTATTGGCAATTTGGATACGTTAGACATTTCAAATAACAAAATTAGTGGCACAATTTCTTCCTCCTTCGGTGATCTGGAACATCTGCTAAAGCTAAATTTAAGTAGGAATCATTTGACGGGATTTATTCCAGCTGAATTTGGCAATCTAAGGAGTGTAATGGAAATAGATATTTCACACAACCAGCTCTCTGGGTTCATTCCTCAAGAACTGAGTCAACTTCAAAATCTTCTCTCCTTGAGACTTGAAAACAACAATTTATCTGGGGACCTGACGTCGCTGATTAGCTGCCTAAGTCTTACTGAATTAAATGTATCTTATAACAATCTAGCTGGTGAGATTCCGACAAGCAACAACTTCTCTAGATTTTCATCTGACAGTTTCCTTGGAAATCTTGCCCTCTGTGGATATTGGAATAGCAACAACTATCCCTGCCATGAACCTCATACGACAGAGCGAGTGACCATATCTAAAGCTGCTATCCTGGGAATTGCTCTCGGTGCCCTTGTAATCCTTCTAATGATCCTTCTAACAGTGTGCCGTCCAAACAACACAATACCTTTTCCAGATGGATCACTTGACAAACCAGTTACGTACTCCACTCCCAAGCTAGTGATCCTTCACATGAACATGGCCCTTCACGTTTATGAGGATATTATGAGGATGACTGAAAATTTGAATGAAAAGTACATTATTGGACATGGAGCTTCAAGCACAGTCTACAAGTGTGTACTGAAGAATTGTAAACCTGTGGCTGTCAAAAAGCTCTTTTCCCACCAGCCCCATAGCATGAAGGGATTCGAGACCGAACTGGAAACCGTGGGTAGCATCAAGCACAGAAATCTAGTAAGCCTCCAAGGATACTCCTTATCCCCCTCTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGCAGTCTTTGGGATCATCTACATGGGTCTAGCTCTACCAAGAAGAAAAAGCTTGACTGGGACACTCGGCTCAATATTGCCCATGGAGCAGCCCAGGGACTATCATATCTACACCATGATTGTAGCCCTCGCATTATCCACAGGGATGTTAAGTCATCTAACATTTTATTAGACAAGGATTTTGAAGCCCATCTCACTGATTTTGGTATTGCCAAGAGCTTATGCACCTCGAAGACATATACATCCACTTATATCATGGGAACCATTGGATACATAGATCCAGAGTATGCTCGGACTTCTCGACTTACTGAAAAGTCCGATGTTTACAGCTTTGGCATTGTGTTACTTGAATTGCTCACAGGAAGGAAAGCTGTGGACAATGAATCAAATCTCCACCAATTGATCTTATCAAAAACAGCCAACAATGCTGTAATGGAGACGGTTGATGCTGAAATAACTGCAACTTGCAAGGACCTTGGAGCTGTAAAGAAGGCATTTCAGCTGGCTCTCCTTTGCACCAAGAGGCAGCCATCCGACCGACCAACAATGCACGAAGTAACACGCGTCATTGCGAGTCTTCTGCCCTCCGCCACAACACTAAAGCAAACACCAACCATAACATCCATGCCCCCATCTGCAAAATCCCCTTGCTACAAGGATGAATATGCAAATCTAAAAACGCCGCACGTGCTGAACTGCCCAACCATGAGCACCTCAGATGCCCAGCTCTTCCTCAAGTTCGGAGAGGTAATATCACAAAACATGTACGGTTTGTCAATTTACTTTAACCAGGCAATGATTTCAGGGGTAATCAACTTGCCAATGGTTTGA 3288 43.49 MSGVCDINGVHFAVEGTVRLLMGRGPSSARSSGHPYPMFPFYPRFVTELWQMGFYLYLPNNSFLHALGFQVLVTNQPWKVQQCKMKSTKRAAMALPVELVVLAFLFCATVGVVDSDDGATLLEIKKSFRDVDNVLYDWTSSPSSDYCMWRGVTCDNATLNVISLNLSGLNLDGEISPSVGNLKGLQTLDLRGNSLSGQIPDEIGDCFSLINLDLSFNEIYGDIPFSISKLKQLEMLVLKNNRLIGPIPSTLSQIPNLKVLDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGTLSPDMCQLTGLWYFDVRNNSLTGGIPQTIGNCTAFQVLDLSYNHLTGEIPFNIGFLQVATLSLQGNQLSGPIPPVIGLMQALAVLDLSCNMLTGPIPSILGNLTYTEKLYLHSNKLTGPIPAELGNMTKLHYLELNDNHLTGNIPAELGKLTDLFDLNVANNNLGGPIPDNLSSCTNLNSLNVHGNKLNGTIPPSFQRLESMTYLNLSTNDLQGPIPVELSRIGNLDTLDISNNKISGTISSSFGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMEIDISHNQLSGFIPQELSQLQNLLSLRLENNNLSGDLTSLISCLSLTELNVSYNNLAGEIPTSNNFSRFSSDSFLGNLALCGYWNSNNYPCHEPHTTERVTISKAAILGIALGALVILLMILLTVCRPNNTIPFPDGSLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLNEKYIIGHGASSTVYKCVLKNCKPVAVKKLFSHQPHSMKGFETELETVGSIKHRNLVSLQGYSLSPSGNLLFYDYMENGSLWDHLHGSSSTKKKKLDWDTRLNIAHGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNESNLHQLILSKTANNAVMETVDAEITATCKDLGAVKKAFQLALLCTKRQPSDRPTMHEVTRVIASLLPSATTLKQTPTITSMPPSAKSPCYKDEYANLKTPHVLNCPTMSTSDAQLFLKFGEVISQNMYGLSIYFNQAMISGVINLPMV 1095
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25928605 25939562 + CmPI595203_05g016150.1 Cmu05g1615 416529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1615 1095 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 609 1010 IPR050647 GO:0001558(PANTHER)|GO:0010286(PANTHER)
Cmu05g1615 1095 Pfam Leucine rich repeat N-terminal domain 115 155 IPR013210 -
Cmu05g1615 1095 SUPERFAMILY L domain-like 351 639 - -
Cmu05g1615 1095 ProSiteProfiles Leucine-rich repeat profile. 256 278 IPR001611 GO:0005515(InterPro)
Cmu05g1615 1095 Pfam Leucine Rich Repeat 376 397 IPR001611 GO:0005515(InterPro)
Cmu05g1615 1095 Pfam Leucine Rich Repeat 471 493 IPR001611 GO:0005515(InterPro)
Cmu05g1615 1095 Pfam Leucine Rich Repeat 423 445 IPR001611 GO:0005515(InterPro)
Cmu05g1615 1095 Pfam Leucine Rich Repeat 305 326 IPR001611 GO:0005515(InterPro)
Cmu05g1615 1095 Pfam Leucine Rich Repeat 401 421 IPR001611 GO:0005515(InterPro)
Cmu05g1615 1095 Pfam Leucine Rich Repeat 185 206 IPR001611 GO:0005515(InterPro)
Cmu05g1615 1095 Pfam Leucine Rich Repeat 614 632 IPR001611 GO:0005515(InterPro)
Cmu05g1615 1095 Pfam Leucine Rich Repeat 330 349 IPR001611 GO:0005515(InterPro)
Cmu05g1615 1095 CDD STKc_IRAK 747 1009 - -
Cmu05g1615 1095 Gene3D Transferase(Phosphotransferase) domain 1 817 1025 - -
Cmu05g1615 1095 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 279 388 - -
Cmu05g1615 1095 Gene3D Ribonuclease Inhibitor 114 277 IPR032675 -
Cmu05g1615 1095 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 114 278 - -
Cmu05g1615 1095 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 817 1020 - -
Cmu05g1615 1095 SMART LRR_typ_2 254 278 IPR003591 -
Cmu05g1615 1095 SMART LRR_typ_2 182 206 IPR003591 -
Cmu05g1615 1095 SMART LRR_typ_2 541 564 IPR003591 -
Cmu05g1615 1095 SMART LRR_typ_2 421 445 IPR003591 -
Cmu05g1615 1095 SMART serkin_6 741 1013 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1615 1095 ProSiteProfiles Protein kinase domain profile. 741 1013 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1615 1095 Pfam Leucine rich repeat 519 578 IPR001611 GO:0005515(InterPro)
Cmu05g1615 1095 Pfam Leucine rich repeat 232 291 IPR001611 GO:0005515(InterPro)
Cmu05g1615 1095 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 712 816 - -
Cmu05g1615 1095 ProSitePatterns Protein kinases ATP-binding region signature. 747 770 IPR017441 GO:0005524(InterPro)
Cmu05g1615 1095 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 389 662 - -
Cmu05g1615 1095 Pfam Protein kinase domain 743 1006 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1615 1095 Gene3D Phosphorylase Kinase; domain 1 723 816 - -
Cmu05g1615 1095 SUPERFAMILY Protein kinase-like (PK-like) 719 1007 IPR011009 -
Cmu05g1615 1095 Gene3D Ribonuclease Inhibitor 278 351 IPR032675 -
Cmu05g1615 1095 Gene3D Ribonuclease Inhibitor 352 661 IPR032675 -
Cmu05g1615 1095 ProSitePatterns Serine/Threonine protein kinases active-site signature. 864 876 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1615 1095 SUPERFAMILY L domain-like 141 392 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1615 Cmu-Chr5:25928605 Cmu09g1318 Cmu-Chr9:18630191 2.10E-18 dispersed
Cmu05g1615 Cmu-Chr5:25928605 Cmu06g0748 Cmu-Chr6:8852076 3.10E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75544 PF00069 Pkinase 5.80E-46 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1615 K20718 - csv:101214398 1862.04