Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1630 ATGTTTATGGCTGCTCGGATTGCCAATCCTTTGAAAGCCCTAATCTCGAATGTGTACAATGTGAATCCTTCTCGTCATTTCCAATTTTTGAACGAGTTCGCAAATTATCTATGCAGAAATCTGTTTGTGGAGTTATGGTCGTGGTCGCAAATCCGGTCGATGACAAGCAGTAGACGTGTTCAGGATAGAAGCCGCTTGAAGAGGGTGCATGATCTTGAAATAGCAACGGAAAAATGGAAGGTAGCTTACAAAGTACTCTTCTTGATTGAAACCCTCAAGCAAGAGCCTGAGATGGTAATTCCTGTTAGGAATTTAGAACAATATCGGAGACAATTCAATCTCCCGAAACCGCACAAGGTCTCGGACTTCATTCGAAAATCGCCTAAAGTGTTTGAATTATACAAGGATCAGAGGGGTGTATTGTGGTGTGGAATGACTAAACAAGCTGAAGATTTGGTGGAAGAGGGGGAGAAGATAATTGAACAACACGCTGATAAGGCTGCCGAGTATGTTACCAGGTTTTTGATGATGTCAGTGAATAAGCGGCTTCCAGTGGACAAAGTTGCTCATTTCAGAAGAGATTTTGGGCTCCCACTCGATTTTCAAACCAAATGGGTGAATGATTACCCTGAACTATTTAAGGTGGTGAAGTCTGAGGATGAATGTGAATATTTGGAGCTTGTTTCTTGGAATCCTGCTTGGGCTGTAACAGAGTTGGAGAGGAAGTTGATGGGTGTGACTGAGAGCACTGCCACTCATACCCCAGGTTTGCTTTCACTTCCTTTTCCAATGAAATTTCCTTCCAATTACAAGAAGATATATAGATATGGAGGGAAAATTGATCACTTCCAGAAGAGGTCTTATTTGTCTCCATATGCCGATGCAAGAGAGCTAAAAGCTGGCTCACTTGAATTTGATAAAAGGGCTGTTGCTGTTATGCACGAGTTGCTTAGCTTTACCATGGAGAAGAGACTTGTTACTGATCACCTTACCCACTTTAGGCGGGAACTTGTGATGCCTCAAAAGCTAATGAGACTTCTTTTGAAGCATATTGGGATATTCTATGTTTCAGAGAGGGGTAAAAGATTTAGTGTTTTCTTGACAGAAGCTTATGAAGGTCCGGAGTTGATTGATAAATGCCCTTTAGTTCTTTGGAAGGAGAAGGTATTGAGCCTTGTTGGTTATAGAGGAAAGAAAAAGAAGATTAAAACTTTCGACGACGTGTCTGAAATGGAGGAGGATAACAGTTCGGCTTTGCCTGAGCAGGATATGGAGGATACTGGTTCTTCAGAAGAAACTGCATTAGATGCCGTTACAGTTGACTTGGAAACTAGGAATCTTCTTAGTGGGTAG 1353 41.83 MFMAARIANPLKALISNVYNVNPSRHFQFLNEFANYLCRNLFVELWSWSQIRSMTSSRRVQDRSRLKRVHDLEIATEKWKVAYKVLFLIETLKQEPEMVIPVRNLEQYRRQFNLPKPHKVSDFIRKSPKVFELYKDQRGVLWCGMTKQAEDLVEEGEKIIEQHADKAAEYVTRFLMMSVNKRLPVDKVAHFRRDFGLPLDFQTKWVNDYPELFKVVKSEDECEYLELVSWNPAWAVTELERKLMGVTESTATHTPGLLSLPFPMKFPSNYKKIYRYGGKIDHFQKRSYLSPYADARELKAGSLEFDKRAVAVMHELLSFTMEKRLVTDHLTHFRRELVMPQKLMRLLLKHIGIFYVSERGKRFSVFLTEAYEGPELIDKCPLVLWKEKVLSLVGYRGKKKKIKTFDDVSEMEEDNSSALPEQDMEDTGSSEETALDAVTVDLETRNLLSG 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26141513 26142865 + CmPI595203_05g016300.1 Cmu05g1630 416544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1630 450 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 49 428 IPR045040 GO:0003723(InterPro)
Cmu05g1630 450 MobiDBLite consensus disorder prediction 406 435 - -
Cmu05g1630 450 MobiDBLite consensus disorder prediction 411 430 - -
Cmu05g1630 450 Pfam Plant organelle RNA recognition domain 67 395 IPR021099 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1630 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1154 Cmu-Chr1:20617178 Cmu05g1630 Cmu-Chr5:26141513 2.50E-43 dispersed
Cmu05g1630 Cmu-Chr5:26141513 Cmu09g0913 Cmu-Chr9:9076531 1.30E-48 dispersed
Cmu05g1630 Cmu-Chr5:26141513 Cmu09g0313 Cmu-Chr9:2987980 3.80E-245 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g685 Blo01g01433 . Bda01g00646 . . Bpe02g00517 . . . . . . Car09g00329 . . . Cpe06g00269 . . . . . . . Cla05g01645 Cam05g1756 Cec05g1763 Cco05g1819 Clacu05g1745 Cmu05g1630 Cre05g1759 . . . . Lsi04g01371 . . . . . . . . . . . . . Cmo09g00381 Cma09g00379 . . . . . . . . . . . . . . . . . . . . . . Cme07g00161
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004384 1 3 3 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 43