Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1635 ATGGGATCGGAGGATTCAGTGAGATTAAGATTGGAGGAATTGCACAAAGACTTGGGGAAGAAACAGAGATTCGAGGAAGCAGTTTCCACCATTATTTCTCTGCTTCAAGATCGCTATCCTACTGCTTCTCCTTCATTACGCAAATCGTTCTATTCCGTAATTTGCCGAGTTGCAACAGTATTGAAGACGAGGTTTACGGCCCCAGGGTTTTGGCTTTCTGGTCTTAAGCTTTTTCAATTTTCTTTGACTTTGCTCTCTGATCATTCAGAGAGACAACACCTGGAGGCTTGCCTAGCTCAGGCCAAGGAAATTCTTCACCAAATCGATAATCCATCTCCTGCTTCACAAAGTAATTCATCAAATGGAGGCTATCTTTTTGAGGGCCATCTCACTGTTGATCCAGAGCCACCCCAGCCCCAGTGGCTGGTGCAGTCAAACCTCTTGACAGCCGCTGCAGCTGCGCTATCTAATGCTGAATCTTCTCAAGGTCCAGCTGAGAACAGCAACACTTCTGAAAATGCTACTAATATTCTTCAAGCGCTTATTGAAAATCTAGATAACGCTGTAGATGGGTTCATGGACTTGGAAATGGCTAGCGGACCGCCAAGAGTCCCTCCTGCAAGTAAAGAAGTCGTCGCAAAACTTCCTGTAATTATGATAACTGATGAAGTTCTTGCCAAGCTAGGAAGAGATGTACAATGTGCTATTTGCAGGGAAAACTTGGCTGTTGATGACAAGATGCAGGAATTGCCTTGCAAACACACATTCCACCCACCTTGTTTGAAGCCCTGGCTGGATGAGCATAACTCTTGTCCGATTTGTCGACATGAATTGCCCACCGACGACCACAAATACGAGAGCTGGAAGGAGCGAGAGAAAGAGGCCGAAGAAGAAAGAAAAGGAGCTGCAAATGCTGTTCGTGGTGGTGAATATATGTATATTTGA 945 45.19 MGSEDSVRLRLEELHKDLGKKQRFEEAVSTIISLLQDRYPTASPSLRKSFYSVICRVATVLKTRFTAPGFWLSGLKLFQFSLTLLSDHSERQHLEACLAQAKEILHQIDNPSPASQSNSSNGGYLFEGHLTVDPEPPQPQWLVQSNLLTAAAAALSNAESSQGPAENSNTSENATNILQALIENLDNAVDGFMDLEMASGPPRVPPASKEVVAKLPVIMITDEVLAKLGRDVQCAICRENLAVDDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDDHKYESWKEREKEAEEERKGAANAVRGGEYMYI 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26194640 26196579 - CmPI595203_05g016350.1 Cmu05g1635 416549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1635 314 Coils Coil 285 305 - -
Cmu05g1635 314 SUPERFAMILY RING/U-box 228 281 - -
Cmu05g1635 314 FunFam E3 ubiquitin-protein ligase RNF181 195 281 - -
Cmu05g1635 314 Pfam Ring finger domain 233 275 IPR001841 -
Cmu05g1635 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 119 280 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cmu05g1635 314 CDD RING-H2_RNF126-like 233 275 - -
Cmu05g1635 314 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Cmu05g1635 314 SMART ring_2 234 274 IPR001841 -
Cmu05g1635 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 281 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1635 Cmu-Chr5:26194640 Cmu10g2842 Cmu-Chr10:34905083 3.80E-18 dispersed
Cmu05g1635 Cmu-Chr5:26194640 Cmu09g0350 Cmu-Chr9:3351659 1.10E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1635 K16274 - csv:101218065 434.106