Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1641 ATGCTTGCTTCCAAGGCTGTAGCTGAGGCTCACAAAAAGAGTGGTGTACCGTTGTTGCATGTTTGCCACGTGTGTGGTGTGGACCGGAGTAAATACGACCATTCCAACGGCTCTTCGAAATCTATCACGGTAGCATTGACTCAGTCCTACCGTAAGCTCACCTCTTCCTACGGCGACGCGTTCCAGTTCAATTTGGGCCGTTGGGCAGCTCCACGGGCATGTGAGGAACGGCTTATTCCTTCCACATCTGTAACCATAGCTACTAGATACTGTTTGTTAGTTTTCTTTTTTCTTTCTTCCATTTTGATCGAAGAGATTGGAGCTGGGCATTTTCAGAGCCTAGACAGTATGGGCTATCTGAATTCAGTCTTGTCTTGCTCGAGCCAGATTCATGCTGCTGAGGAGGCACCTGTAAGCGGCGGAGGATTAAGTCAGAATGGAAAGTTCAGCTACGGATATGCTAGCTCTCCTGGGAAGAGATCTTCGATGGAAGATTTTTATGAGACACGAATAGATGGTGTGGAAGGAGAAATAGTTGGTCTATTTGGTGTTTTTGATGGTCATGGCGGAGCTCGAGCTGCGGAGTATGTTAAGCACAATCTTTTTAGTAACTTGATCAGCCATCCAAAGTTCATATCGGATACCAAGTCCGCTATAGCTGATGCATACAACCACACAGACACAGAATTTCTTAAGTCGGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATCCTAGTTGGTGACCGCTTACTTGTTGCAAATGTGGGTGACTCTAGAGCTGTTATTTGCCGGGGTGGCACTGCCATTGCTGTCTCTCGAGATCATAAGCCTGACCAAACTGATGAGCGACGACGAATTGAGGATGCTGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCACGTGCATTTGGTGATAGGTTGTTAAAGCAATATGTTGTTGCTGACCCTGAAATTCAGGAGGAAAAGATTGATAGCTCGCTCGAATTTCTTATACTTGCAAGTGATGGACTGTGGGATGTTGTCTCTAATGAGGAAGCCGTTGCTATGACTAAACCAATTCAGGACCCAGAAGAGGCAGCGAAGAGGTTGATGCAAGAAGCATATCAGAGAGGCAGCGCAGATAACATTACTTGTGTCGTCGTTCGTTTCTTGGCGAATCAAGGAAGTCCCTCTCTTGCAACATCTGGGTCTACCTTCCCTGCTTGCCTACCGAATTCCGTCGTCTGCCGCGAGCTAGGTCTACCGTCCAGTTGCATCGCTTGCCGCGAGCCAGGTTTGCCGCTCCAATGA 1329 47.48 MLASKAVAEAHKKSGVPLLHVCHVCGVDRSKYDHSNGSSKSITVALTQSYRKLTSSYGDAFQFNLGRWAAPRACEERLIPSTSVTIATRYCLLVFFFLSSILIEEIGAGHFQSLDSMGYLNSVLSCSSQIHAAEEAPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLISHPKFISDTKSAIADAYNHTDTEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVSNEEAVAMTKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGSPSLATSGSTFPACLPNSVVCRELGLPSSCIACREPGLPLQ 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26357131 26369624 - CmPI595203_05g016410.1 Cmu05g1641 416555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1641 442 Pfam Protein phosphatase 2C 179 389 IPR001932 -
Cmu05g1641 442 ProSitePatterns PPM-type phosphatase domain signature. 181 189 IPR000222 GO:0043169(InterPro)
Cmu05g1641 442 FunFam probable protein phosphatase 2C 59 142 400 - -
Cmu05g1641 442 PANTHER PROTEIN PHOSPHATASE 134 395 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cmu05g1641 442 SUPERFAMILY PP2C-like 144 396 IPR036457 -
Cmu05g1641 442 SMART PP2C_SIG_2 161 396 IPR001932 -
Cmu05g1641 442 SMART PP2C_4 140 394 IPR001932 -
Cmu05g1641 442 ProSiteProfiles PPM-type phosphatase domain profile. 150 396 IPR001932 -
Cmu05g1641 442 CDD PP2Cc 149 396 IPR001932 -
Cmu05g1641 442 Gene3D - 142 401 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0984 Cmu-Chr5:9005640 Cmu05g1641 Cmu-Chr5:26357131 6.70E-94 dispersed
Cmu05g1641 Cmu-Chr5:26357131 Cmu08g0589 Cmu-Chr8:18023066 5.40E-95 dispersed
Cmu05g1641 Cmu-Chr5:26357131 Cmu11g1415 Cmu-Chr11:26375805 1.50E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1641 K17506 - csv:101216117 574.704