Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1666 ATGCCCAAGAAACTACAAAGCTGGATCCAAAATTCGGTTGATGGTGTGAAGGGGTATCACTGGTGGGAACCCACTGCCCACAAGGCCCTTAAATTCCATCGTATTTCCCATTCATACATAGCTTCAGTCTCCCAGCTTCATTTCCCTCCCACGAACACGAAGGATGCGTGCGTCTTTTTGGTATCCCTTCTCCGTACTGTCATTACTCAAAAGCACAGAGAGGGTTTAATCTCCAAGACCTTGAAACTAATGGGGACATCAGGCGCAAAGGACGATATAGAGATGAATAGTGAGGGGGAAGACTTATCACCTGGAACGGATATGGATACAGATGATGACGATTATTATGCTGAGCCAGTCAACATACATGATCTGGGGGAAGCATTTCTAAATGATTTTTGTAAGAAGTCATCAATGGCATTTTTTAATCAGTACGGCCTTATCAGTCACCAAATCAACTCGTACAATGAGTTCATAAAAAGTGGTCTTCAGAAGGCCTTTGATTATTTTGGTGAGATTGTAGTTCAGCCAGGATATGACCCCTCTAAGAAAGGAGACGGGGAATGGAGATATGCTTCAGTGAAGTTTGGTAAGGTAACCCTCGATAAGCCAAAGTTCTGGGGTGGTGCAGCAAGTGGAAAAGAGTATAACATGCTTCCTAGGCATGCTCGACTTCAGAACATGACTTATTCATCAAGGATGAAAATGGAAATTAGTTTAGAGGTATATACTCAAAGGTTAGTCAGAAGCGACAAATTTAAAACTGGAAAAGATCAATATGTCGACAAGGAACATGTAACGGGAGGAGAGATCAGGGATATCTTTATAGGCAGGCTACCTGTGATGGTGAATTCTGACCTCTGCTGGATGAAGGATGAGCAGAAACGTGACTGTGAATTTGATCATGGAGGTTATTTTTTAATCAAAGGTGCAGAAAAAATATTTGTTGCTCAAGAGCAGAGTTGTTTGAGAAGACTCTGGATTTCTAATATTCAAGGCTGGACTGTGGCATACAGATCAGAAGTTAAGAGAAATAGACTAATTATTAGACTAGTTGAAAATTCCAAGTCTGAAGAACTAAAAAGCAAGGAGAAAGTCCTCAATGTATATTTTTTGTCCACAGAAGTTCCTGTGTGGATTTTATTCTTTGCACTTGGTGTTTCATCAGACAAAGAAATAGTAGATTTAATCGACTATGGCAGAGATGATCCGACTGTTCTGAATATTCTCTTTGCCTCTGTTCGTGAAGTTGATAATGATGATAAGTGGAAAGATTTTCGAAGAGGTAAAAGAGCACTGAATTTTTTGGACAATGAGGTTAAAAAGACAAGTTTTCCACCTGCTGAAAAAATTGAAGATTGCCTGAACCTATATCTTTTTGCCAGCTTGAAAGGCTTAAAGCAGAAGTGTCGTTTCCTTGGATATATGGTTAAATGTCTTCTGCAAGCCTATACTGGCCGGAGGAAATGTGATAATAGGGATGATTTCCGCAATAAGAGGTTTGAGTTGGCTGGAGAACTGCTTGAAAGAGAGATTAAAGTACATATTGCACATGCACGTAGGCGCATGGAAAAAGCTTTACAAAGGGACCTCTATGGGGATCGTGTAGTGCGCCAAATAGAACACTATTTTGATGCTTCAATAATCACTAATGGTCTATCCCGAGCATTCTCTACTGGAGCATGGGCACATTCATTTAAGAGGATGGAAAGGATTTCAGGTGTGGTTGCAACTCTTGGCCGTGCTAATCCCTTGCAGACAATGGCTGAATTGAGGAGAACACGTCAACAGGTTGCATACACTGGGAAAGTCGGTGATCAAAGATACCCGCATCCTTCTCACTGGGGAAGGGTTTGCTTCCTCTCCACTCCGGATGGTGAAAATTGTGGGCTTATTAAAAATTTGTCCGTCACAGGACTTGTAAGCTTAAACACATCAAAGCCCATAGTTCCCACATTGTTTCGATGTGGAATGGAGAATTTGGTGGATGATACGTTTACTTCTCTTAGTGGGAAGCACAAAATTTTTCTTGATGGGGAATGGGTTGGAGTTTGTGAAGATTCCCTTTCATTTGTAACAAAAGTGAGACGCAAGCGACGAAGGGATCCGTTGCTGCATCAGGTAGAAGTCAAAAGAGATGAACAGCTGAAAGAGGTACGTATATTTTCCGACGCTGGAAGGATATTACGTCCTCTCTTAGTTGTAGAGAACTTAAATAGGATTGATAAGTCTAAGGGAGAAAACTACACTTTTCAATCCCTTTTGAACAAGGGAATAATTGAACTTATTGGAACTGAAGAAGAAGAAGACTGTCGTACAGCTTGGAGTATTAAGCATCTTGCGGAAGATGAAGGGACTACGAAATATTCCCATTGTGAACTTGATATGTCATTTTTATTAGGTTTAAGCTGCTCACTTGTCCCGTTTGCAAATCATGACCATGCTAGGAGGGCTCTGTTTCAATCCCAGAAGCACTCTAATCAAGCTATTGGATTTTCAACAACCAATTCTAATTTTCGTGTGGATACTTTATCCCACCAGTTACACTATCCACAAAGACCACTTTTTCGTACAATGACTGCTGATTGCCTTGGAACGCCTGGATACCTGTCATCTCACACCGGTATACTACCAAAACCTGAGTTCTATAATGGTCAGAATGCTATTGTGGCAGTCAATGTTCATCTGGGTTACAACCAAGAAGATTCATTAGTAATGAACAGGGCTTCTCTGGAGCGTGGCATGTTTCGGTCTGAGCATATCCGGAGTTACAAGGCTGAGGTAGATAATAAAGAATCTTCAGAGAAGAGGCGAAAATCTGATGATGTAATAAATTTTGGAAAAACTCAAAGTAAAATTGGAAGAGTTGACAGCTTAGACGAGGATGGCTTCCCTTACATCGGTGCAAATTTGCAGAGTGGGGACATTGTCATTGGTAGATGTGCGGAATCTGGGGCCGATCACAGTATCAAACTGAAGCACACTGAGAAGGGCATGGTTCAGAAAGTTGTGCTCTCTTCTAATGACGACGGGAAGAATTATGCTGTTGTATCCCTCAGACAGGTTCGATCTCCTTGTCTTGGAGACAAGTTTTCAAGTATGCATGGACAAAAGGGAGTTCTGGGGTTTTTGGAGTCTCAAGAGAATTTTCCCTTCACCATCCAGGGGATAGTTCCAGATATTGTTATAAATCCACATGCTTTTCCTTCGCGACAGACTCCTGGTCAACTATTGGAAGCGGCTCTCGGGAAAGGGATTGCTGCTGGCGGTTCTCTGAAATATGCGACGCCTTTCTCAACCCCTTCTGTTGATGCCATTACAGACCAGCTTCACAGGGCAGGGTTTTCAAGATGGGGAAGCGAGAGGGTTTACAATGGCCGAACTGGCGAAATGATGCGATCACTCATATTCATGGGTCCAACATTCTACCAGCGCTTAATCCACATGGCTGAAGACAAGGTTAAATTTCGCAACACTGGCCCTGTCCACCCTCTCACACGACAACCTGTTGCCGACCGAAAGCGTTTTGGCGGGATCAAGTTTGGAGAGATGGAACGTGATTGTCTTATAGCTCATGGTGCCTCGGCCAACTTGCACGAACGCCTATTTACCCTCAGTGATTCTTCCCAGATGCATGTTTGCCAGAAATGCAAGAACGTTGCGAGTGTGATTCAGCGATCGGTGGCTGGTGGTCGTAAGATAAGGGGTCCATATTGTCGGGTTTGCGAGTCGGTCGATGATATCGTGAGGGTAAATGTGCCGTATGGAGCCAAGTTGTTGTGCCAGGAGCTATTCAGCATGGGCATCAATCTCAAGTTCGAAACACAGCTGTGTTGA 3837 42.87 MPKKLQSWIQNSVDGVKGYHWWEPTAHKALKFHRISHSYIASVSQLHFPPTNTKDACVFLVSLLRTVITQKHREGLISKTLKLMGTSGAKDDIEMNSEGEDLSPGTDMDTDDDDYYAEPVNIHDLGEAFLNDFCKKSSMAFFNQYGLISHQINSYNEFIKSGLQKAFDYFGEIVVQPGYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKMEISLEVYTQRLVRSDKFKTGKDQYVDKEHVTGGEIRDIFIGRLPVMVNSDLCWMKDEQKRDCEFDHGGYFLIKGAEKIFVAQEQSCLRRLWISNIQGWTVAYRSEVKRNRLIIRLVENSKSEELKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALNFLDNEVKKTSFPPAEKIEDCLNLYLFASLKGLKQKCRFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAGELLEREIKVHIAHARRRMEKALQRDLYGDRVVRQIEHYFDASIITNGLSRAFSTGAWAHSFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDQRYPHPSHWGRVCFLSTPDGENCGLIKNLSVTGLVSLNTSKPIVPTLFRCGMENLVDDTFTSLSGKHKIFLDGEWVGVCEDSLSFVTKVRRKRRRDPLLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLNKGIIELIGTEEEEDCRTAWSIKHLAEDEGTTKYSHCELDMSFLLGLSCSLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDVINFGKTQSKIGRVDSLDEDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26640141 26651359 - CmPI595203_05g016660.1 Cmu05g1666 416580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1666 1278 Pfam RNA polymerase Rpb2, domain 7 1177 1275 IPR007641 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cmu05g1666 1278 Pfam RNA polymerase Rpb2, domain 2 366 500 IPR007642 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cmu05g1666 1278 Pfam RNA polymerase Rpb2, domain 4 675 736 IPR007646 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cmu05g1666 1278 Gene3D RNA polymerase alpha subunit dimerisation domain 1162 1276 - -
Cmu05g1666 1278 Pfam RNA polymerase beta subunit 146 534 IPR007644 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cmu05g1666 1278 FunFam DNA-directed RNA polymerase subunit beta 1162 1276 - -
Cmu05g1666 1278 Gene3D - 805 1161 IPR037033 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cmu05g1666 1278 Pfam RNA polymerase Rpb2, domain 3 579 638 IPR007645 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cmu05g1666 1278 Pfam RNA polymerase Rpb2, domain 5 751 794 IPR007647 GO:0006351(InterPro)
Cmu05g1666 1278 Pfam RNA polymerase Rpb2, domain 6 804 1175 IPR007120 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cmu05g1666 1278 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 139 1274 IPR015712 GO:0001055(PANTHER)|GO:0003899(PANTHER)|GO:0003899(InterPro)|GO:0005665(PANTHER)|GO:0006351(InterPro)|GO:0032549(InterPro)
Cmu05g1666 1278 ProSitePatterns RNA polymerases beta chain signature. 1028 1040 IPR007121 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cmu05g1666 1278 FunFam DNA-directed RNA polymerase subunit beta 139 323 - -
Cmu05g1666 1278 Gene3D - 835 1024 IPR014724 GO:0003899(InterPro)
Cmu05g1666 1278 CDD RNA_pol_B_RPB2 147 1274 IPR015712 GO:0003899(InterPro)|GO:0006351(InterPro)|GO:0032549(InterPro)
Cmu05g1666 1278 FunFam DNA-directed RNA polymerase subunit beta 490 678 - -
Cmu05g1666 1278 Gene3D - 491 668 - -
Cmu05g1666 1278 Gene3D - 139 322 - -
Cmu05g1666 1278 Gene3D RNA polymerase Rpb2, domain 2 328 490 IPR037034 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cmu05g1666 1278 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 134 1275 - -
Cmu05g1666 1278 FunFam DNA-directed RNA polymerase subunit beta 906 1024 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1666 K16252 - - csv:101212812 2265.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1666 Cmu-Chr5:26640141 Cmu07g0067 Cmu-Chr7:494252 9.70E-137 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g576 Blo01g01419 . Bda01g00661 . . Bpe02g00534 . Bma01g02175 . . Cma01g01667 . Car09g00358 . . . . . . . . . . . Cla05g01679 Cam05g1794 Cec05g1802 Cco05g1858 Clacu05g1781 Cmu05g1666 Cre05g1796 . . Cone17ag0982 . Lsi04g01338 . . . . . . . . . . . Sed13g1963 Cmo01g01716 Cmo09g00414 Cma09g00409 . Car01g01281 . . Cpe02g00323 Bhi09g03010 Tan01g3560 Cmetu07g2167 . Hepe01g1964 Mch11g0501 . . . . . . . . . . . Cme07g00123
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010517 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 32