Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1673 ATGGAGGAGAGGCATGTTCTGTTTGGTAAATATGAGATTGGGAGATTGCTAGGGAAGGGAACTTTTGCTAAGGTTTATTATGGAAAAGAATTGGAATCTGGTGAAAGTGTAGCGATTAAGGTTTTAAATAAGGACCATGTCAAGAAGGAAGGGATGATGGAGCAGATCCAGCGCGAGATTTCTGTTATGCGTCTTGTTCGTCATCCGAACATTGTTGAGTTGAAGGAAGTAATGGCGACGAAGACGAAGATCTTCTTCGTTATGGATTATGTTCGCGGTGGTGAACTTTTTGCCAAAGTCGCTAGAGGAAAACTCAAGGAAGATGTGGCTCGGAAGTATTTTCAGCAGTTAATCAGCGCAGTTGATTACTGTCACAGCCGTGGAGTCTCTCATCGCGATTTGAAGCCGGAGAATCTTTTGCTGGATGAGAACGAAGATCTCAAGATCTCCGACTTTGGACTCTCCGCTTTACCGGAACAGCTTCGGAACGACGGTCTTCTCCACACGCAGTGCGGTACTCCGGCTTACGTCGCACCCGAAGTACTAAGAAGAAAGGGCTACGATGGAGCAAAAGCCGATATCTGGTCTTGCGGTGTGATTTTGTATGTTTTGTTAGCAGGATTCCTTCCATTTCAGGATGAGAACATCATGACTATGTATAAGAAAGTTTTCAAGGCCGAATTCGAATGTCCGCCATGGTTCTCCGCCGAATCGAAGCGTTTGATTTCGAAAATCCTCGTCGTAGATCCAGGAAGACGAATCACAATCGGAGCAATCACGCGAGTTCCTTGGTTCCGAAAAGATTTCTCGAGATCGCTCTCGTTCACGATGAAAGAAATAATCGCAGCGAAAGCAGAGGATTCCGATTCCGAGAGTCCAAAACTATCGACGCCAAAATTCTTTAATGCCTTCGAATTAATATCGTCGATGTCGTCCGGATTCGATCTTTCCAGTTTATTCGAGAACAAAAGGAAGACAGGATCCATGTTCACATCGCGATGCTCAGTATCGACGATAATGGAGAAGATCGAGACGGTGGCGAAGAAACTGAGCTTCAAGGTATCGGAAGTAAAAGATTTCAAGGTCCGGCTGCAAGGTCCGGCGGAGGGGCGAAAAGGAATGCTGTCTGTGACGGCGGAGGTGTTCGAAATAGCGCCGGAAGTTGCGATAGTGGAATTCTCAAAGTCGTCCGGCGATACTCTGGAATATTCGAAGTTCTGTGAAGAAGACGTCCGGCCGGCGCTGAAAGACATCGTTTGGACGTGGCAAGGTGAATGTGTCCCTAACGTTGACGGACGTCACGGCCAATTTGACGGCGACGGATTTTTATGA 1332 46.85 MEERHVLFGKYEIGRLLGKGTFAKVYYGKELESGESVAIKVLNKDHVKKEGMMEQIQREISVMRLVRHPNIVELKEVMATKTKIFFVMDYVRGGELFAKVARGKLKEDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENEDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGAKADIWSCGVILYVLLAGFLPFQDENIMTMYKKVFKAEFECPPWFSAESKRLISKILVVDPGRRITIGAITRVPWFRKDFSRSLSFTMKEIIAAKAEDSDSESPKLSTPKFFNAFELISSMSSGFDLSSLFENKRKTGSMFTSRCSVSTIMEKIETVAKKLSFKVSEVKDFKVRLQGPAEGRKGMLSVTAEVFEIAPEVAIVEFSKSSGDTLEYSKFCEEDVRPALKDIVWTWQGECVPNVDGRHGQFDGDGFL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26723186 26724517 - CmPI595203_05g016730.1 Cmu05g1673 416587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1673 443 Pfam NAF domain 298 354 IPR004041 GO:0007165(InterPro)
Cmu05g1673 443 CDD CIPK_C 302 416 - -
Cmu05g1673 443 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Cmu05g1673 443 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 413 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cmu05g1673 443 SMART serkin_6 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1673 443 FunFam Non-specific serine/threonine protein kinase 2 90 - -
Cmu05g1673 443 SUPERFAMILY Protein kinase-like (PK-like) 7 285 IPR011009 -
Cmu05g1673 443 FunFam Non-specific serine/threonine protein kinase 4 298 - -
Cmu05g1673 443 Gene3D Kinase associated domain 1, KA1 296 421 - -
Cmu05g1673 443 Gene3D Transferase(Phosphotransferase) domain 1 91 271 - -
Cmu05g1673 443 Coils Coil 39 59 - -
Cmu05g1673 443 CDD STKc_SnRK3 10 264 - -
Cmu05g1673 443 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1673 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1673 443 ProSiteProfiles NAF domain profile. 296 321 IPR018451 GO:0007165(InterPro)
Cmu05g1673 443 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1673 443 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524(InterPro)
Cmu05g1673 443 FunFam Non-specific serine/threonine protein kinase 296 420 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1673 Cmu-Chr5:26723186 Cmu08g1125 Cmu-Chr8:23600914 9.00E-106 dispersed
Cmu02g2103 Cmu-Chr2:34658069 Cmu05g1673 Cmu-Chr5:26723186 2.00E-35 transposed
Cmu10g2059 Cmu-Chr10:26455886 Cmu05g1673 Cmu-Chr5:26723186 4.70E-175 transposed
Cmu05g1673 Cmu-Chr5:26723186 Cmu06g1287 Cmu-Chr6:24033478 9.50E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75546 PF00069 Pkinase 1.30E-74 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1673 - - - 0.0