Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1682 ATGACGGTTGAACCTAGACTCGATGACCCAATTGACCAATTTCCCACTGGAATGCGTGTTCTCGCTGTTGACGACGATCCCACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGTTGCCAGTATCATGTCACTACAACTAATCAGGCTATTATGGCACTCAAGTTGCTGAGGGAGAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTTCACATGCCTGACATGGATGGATTTAAGCTGCTGGAGCTTGTTGGGCTGGAGATGGACCTGCCTGTTATTATGCTTTCTGCAAATGGAGATCCCAAACTTGTTATGAAAGGAATTACTCATGGAGCATGTGATTACTTGTTGAAACCTGTTCGCATTGAGGAGTTAAAGAACATTTGGCAGCATGTAATCAGAAGAAAGAAATTTGATCCAAAGGACCGAATGAATTCTGGCAATCAGGACAGGCCTGATTCTGAAAATGGCGAAGAAGCAGCAGATCCAAATGGGAAATTTAATAAAAAAAGGAAGGACCAGAACTATAACGAAGATGATGACCAGGACTATGGGCAAGAGAACGATGACTCATCGACCCAGAAGAAGCCTCGTGTTGTTTGGTCCGTGGAGCTGCATAGGAAGTTTGTAAATGCTGTCAACCAGTTAGGCATAGACAAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAATGTCGAAAAGCTCACAAGAGAAAATGTAGCTAGCCATCTCCAGAAATACAGGCTTTATCTAAAGAGAATCAGCTGTGTGGCAAACCAGCAAGCTAACATGGTGACTGCATTGAGCAGCGCAGATCCTTCTTATTTGAGAATTGGTTCCCTTAGCGGAATTGGGAATTTCCATTCTTTGACTGGACCTCCACAGTTTCCTAACACTGCTTATAGATCTATCCCAACCACCGGGATGCTTGGTCGATTGAATTCTCCTGCTTGTATGGGTATGCATGGCCTTTCTTCCCCGGGAACAGTCCAACTCAGTAATTTGAACAATTCAAGCAATGATCAGACTACATTTCAGCCAATCATGCTTTCTGGAAACCGTAGTGGGAATATTTTCCGGGGAATGCCTGAGCCATCGGAAATCGATCAACTACAACATGTTAAACATGGGACTCATGCGGACAGTCTCTCTTCTGCTTTTGATGAGAGAACAGTATTTCCTGCTTCCATTGGCCTCCCAAATGCAAACATGTCTTCCGGTACTCTAAGTAATCCTCTTTTAGGATTAACTAATGATCCCTTGATTTCAGAAGTCCAGCATCATGAAGTGAATGGTGGTAGAAAATTTGGAACTCCATCTTCCATTTCGGTAGTATCTTCAAATTCAGATAGCTCACGTCCTTCACTAGATAATGTTAGATGCACCGGTGACAATTGGTCGAATGCTGTTCATTCATCTAGGGTGCACTTGAATACAATTCCATCGAGCAACCTTTCTAATGTTGCTACTTCCTACCATAGTCAGTTGAGAGACAATACTACCAGTGCATTGCATATAGGAAATTGTCTTTCTGACATCTCTTCTATTACTTCAATATCTACTCAGTCCCATGATTCAAGAATAGATTCTCAACGTCAAGCAGCCACAACAAGCAACAGGTTTGATCAAATGATCTCAAAGGTTCCTGTTCAAGATTGGAATGATCATAAAGAGGATTCCTATTACCACACAACTATGGCCTGTAGCTCATCAAATTCTTTGATACCAGTGAATGGTGCTGCAGAGACTTTGCCCAAACGCTTGGAAAATCAGAACATAATCTTCTCCAGCAGCAAGGATTTTAATGTGACTAGTCAAGCAAATGTTCTTGATCATGCAATGGTTGAACATGATCAATTCAAGAAATCAACCATGGAGACATCACTCATGTTGAAACAAGGGTACCTGTATGATCATCAGCAAAAGATGCAATCTAGACTATCATCAAGTAACTGCGGCTCCTTGGAAGACATAGCATGTGCGATGATGAAACAGGAACAAGATGATGGAAAATTATTGGAAGGAGACTTTGGATGTGATAATTATCCCATCGGAACATGCATGTGA 2070 41.93 MTVEPRLDDPIDQFPTGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAIMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDRMNSGNQDRPDSENGEEAADPNGKFNKKRKDQNYNEDDDQDYGQENDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLSGIGNFHSLTGPPQFPNTAYRSIPTTGMLGRLNSPACMGMHGLSSPGTVQLSNLNNSSNDQTTFQPIMLSGNRSGNIFRGMPEPSEIDQLQHVKHGTHADSLSSAFDERTVFPASIGLPNANMSSGTLSNPLLGLTNDPLISEVQHHEVNGGRKFGTPSSISVVSSNSDSSRPSLDNVRCTGDNWSNAVHSSRVHLNTIPSSNLSNVATSYHSQLRDNTTSALHIGNCLSDISSITSISTQSHDSRIDSQRQAATTSNRFDQMISKVPVQDWNDHKEDSYYHTTMACSSSNSLIPVNGAAETLPKRLENQNIIFSSSKDFNVTSQANVLDHAMVEHDQFKKSTMETSLMLKQGYLYDHQQKMQSRLSSSNCGSLEDIACAMMKQEQDDGKLLEGDFGCDNYPIGTCM 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26887605 26891957 - CmPI595203_05g016820.1 Cmu05g1682 416596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1682 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 368 IPR045279 GO:0009736(InterPro)
Cmu05g1682 689 SMART REC_2 18 130 IPR001789 GO:0000160(InterPro)
Cmu05g1682 689 NCBIfam myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677(InterPro)
Cmu05g1682 689 MobiDBLite consensus disorder prediction 141 180 - -
Cmu05g1682 689 Pfam Myb-like DNA-binding domain 199 249 IPR001005 -
Cmu05g1682 689 FunFam Two-component response regulator 193 256 - -
Cmu05g1682 689 MobiDBLite consensus disorder prediction 433 457 - -
Cmu05g1682 689 Gene3D - 193 256 - -
Cmu05g1682 689 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 253 IPR017930 -
Cmu05g1682 689 FunFam Two-component response regulator 18 176 - -
Cmu05g1682 689 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160(InterPro)
Cmu05g1682 689 CDD REC_typeB_ARR-like 20 134 - -
Cmu05g1682 689 MobiDBLite consensus disorder prediction 437 457 - -
Cmu05g1682 689 MobiDBLite consensus disorder prediction 141 196 - -
Cmu05g1682 689 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160(InterPro)
Cmu05g1682 689 Gene3D - 17 152 - -
Cmu05g1682 689 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
Cmu05g1682 689 SUPERFAMILY CheY-like 16 142 IPR011006 -
Cmu05g1682 689 PIRSF RR_ARR_type-B 1 689 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0703 Cmu-Chr5:6051007 Cmu05g1682 Cmu-Chr5:26887605 6.20E-87 dispersed
Cmu05g1682 Cmu-Chr5:26887605 Cmu06g0463 Cmu-Chr6:5224798 1.30E-87 dispersed
Cmu11g0338 Cmu-Chr11:3883216 Cmu05g1682 Cmu-Chr5:26887605 6.20E-111 wgd
Cmu05g1682 Cmu-Chr5:26887605 Cmu06g1276 Cmu-Chr6:23871806 3.10E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6209 PF00072 Response_reg 8.90E-23 CL0304 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1682 K14491 - csv:101215220 1272.3