Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1687 ATGGCCAGACCGCAAAAGCGCTACCGTGGTGTAAGACAAAGGCATTGGGGCTCTTGGGTTTCTGAAATTCGTCATCCTTTATTGAAAACAAGAATTTGGCTGGGAACATTTGAAACCGCGGAAGATGCTGCGAGAGCTTATGATGAAGCTGCAAGATTAATGTGTGGCCCAAAAGCAAGAACGAATTTTCCATACAATCCAAATGCAATACAATCCTCGAATTCGAGGATTTTATCGGCTAACTTGACTGCGAAATTGCATAGGTGTTATATGGCTTCTTTGCAGATTAGTAACCAAGCTTCAGGGGAGTTTAAAAGAGACATTCCGGCGGTATTTCCGGCATCAACGCCGCTACCTCATGCGGTTGTTGGCTCCGGTGTGGCCAGTTCGGCGGTGGAGGAGATTGGACCGGCGGCGGAGCAAGGGCCATGTGCGGCGGATTGGATGGTGAGAAGTGTGAAAATGGAAAGTGAATTTGGGGAGTTGAAATTGTTGGAAGATGATCACATTGAGCAAATGATTGAGGAACTTCTTTATTATGGATCCATGGAGTTTTGTCTGTGA 564 46.28 MARPQKRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNAIQSSNSRILSANLTAKLHRCYMASLQISNQASGEFKRDIPAVFPASTPLPHAVVGSGVASSAVEEIGPAAEQGPCAADWMVRSVKMESEFGELKLLEDDHIEQMIEELLYYGSMEFCL 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26947181 26947824 - CmPI595203_05g016870.1 Cmu05g1687 416601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1687 187 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1687 187 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1687 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 111 IPR050913 -
Cmu05g1687 187 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cmu05g1687 187 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1687 187 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1687 187 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1687 187 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Cmu05g1687 187 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1687 187 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1687 Cmu-Chr5:26947181 Cmu08g1298 Cmu-Chr8:25240078 2.40E-52 dispersed
Cmu05g1687 Cmu-Chr5:26947181 Cmu07g1223 Cmu-Chr7:27538320 1.50E-38 wgd
Cmu05g1687 Cmu-Chr5:26947181 Cmu08g1297 Cmu-Chr8:25232813 1.40E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6211 PF00847 AP2 6.80E-12 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1687 - - - 0.0