Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1693 ATGGCGTATCACAATCACCTCTCACAAGATCTTCCTCTTCACTTCTCTGACCACCACCAAAATCAGCCTCTCTCTGATACTTCTCTCCGTACCATTTTGCCGGACCAACTTCCCGGCGCCCACTCCTCACCGGACCCCAAGTCTCACCAACCCCATCACCACCATCACCATCATCCGCTTCAGACGGCACCGAATTGGCTCAACAACGCACTTCTTCGCAACCAAAACCCCCATTCACACTACTCTACCGACACCACCGCCACCGCCGCCGCCGCGGCCAATACTAATTTCCTTAACCTTCACACCACTGCATCCGATTCCACCGTTTCTCACTCCTCTAACCAATGGCTTTCCCGCCCGATCCTCCACCGTAACCACAGCGATGTCATCGACGATGTCGCCGCTGCCGCTGCCGGTGATGCTATGATCGGTGCTGCCACTGCTGCGCTCTCTCACGATTCTGGCGACATGAAGAACGATGCTAATAGCGGGGATGGATTGAACAAGAGCGAGGGTATGGTGATGGAAACTGGTGCCGGCGGTGAAGGGGTTTTGAATTGGCAACATGCTCGTTATAAAGCTGAGATTCTTGCTCATCCTCTTTACGAGCAGCTTCTTTCCGCTCATGTCGCTTGCCTTCGCATCGCAACACCGGTCGATCAATTACCGAGGATCGATGCACAGCTCGCTCAGTCGCAGAATGTCGTCGCTAAGTACTCCGCCTTGGGCCACTCCGCTCCGCCGTCCATGGTTGGTGATGATAAAGAGCTTGATCAGTTCATGACGCATTATGTTCTTTTGCTTTGTTCATTCAAAGAACAACTTCAACAACATGTTCGAGTCCATGCAATGGAAGCAGTAATGGCTTGCTGGGACATTGAGCAGTCCCTACAAAGCTTAACAGGAGTTTCACCAGGTGAAGGTACAGGAGCAACAATGTCGGACGACGACGACGACCAAGTCAACAGCGATGCAAATCTGTTCGATGGAAGTTTAGAGGGTCCAGACACCATGGGGTTCGGCCCTCTTATTCCCACAGAGAGCGAGAGATCCTTGATGGAGAGGGTCAGGCAAGAACTGAAGCATGAATTAAAAGCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAGAGAAGAGCTGGAAAACTCCCTGGTGACACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCTAAATGGCCTTATCCTACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTACAACTGAAACAGATAAACAATTGGTTCATTAACCAAAGGAAGAGAAACTGGCACAGCAATCCTTCAAGTTCAACAAACTTGAAAAGCAAACGCAAAAGAAGTAATGCAGGTGAAAACAGCAGCGACCGTTTCAAATGA 1407 49.89 MAYHNHLSQDLPLHFSDHHQNQPLSDTSLRTILPDQLPGAHSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETGAGGEGVLNWQHARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHSAPPSMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVNSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKRSNAGENSSDRFK 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27039152 27043384 + CmPI595203_05g016930.1 Cmu05g1693 416607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1693 468 Pfam ELK domain 359 380 IPR005539 GO:0003677(InterPro)
Cmu05g1693 468 SMART KNOX2_2 247 302 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu05g1693 468 FunFam homeobox protein knotted-1-like 3 isoform X1 380 441 - -
Cmu05g1693 468 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 137 450 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu05g1693 468 Gene3D - 380 441 - -
Cmu05g1693 468 Pfam KNOX2 domain 251 301 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu05g1693 468 MobiDBLite consensus disorder prediction 436 453 - -
Cmu05g1693 468 SMART HOX_1 381 446 IPR001356 GO:0003677(InterPro)
Cmu05g1693 468 SMART KNOX1_2 190 234 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu05g1693 468 Pfam KNOX1 domain 192 233 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu05g1693 468 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677(InterPro)
Cmu05g1693 468 MobiDBLite consensus disorder prediction 436 468 - -
Cmu05g1693 468 SMART ELK_2 359 380 IPR005539 GO:0003677(InterPro)
Cmu05g1693 468 CDD homeodomain 382 443 IPR001356 GO:0003677(InterPro)
Cmu05g1693 468 MobiDBLite consensus disorder prediction 33 62 - -
Cmu05g1693 468 SUPERFAMILY Homeodomain-like 381 445 IPR009057 -
Cmu05g1693 468 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu05g1693 468 ProSiteProfiles ELK domain profile. 359 379 IPR005539 GO:0003677(InterPro)
Cmu05g1693 468 MobiDBLite consensus disorder prediction 454 468 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1693 Cmu-Chr5:27039152 Cmu05g1806 Cmu-Chr5:28165876 4.20E-29 dispersed
Cmu01g0309 Cmu-Chr1:3174113 Cmu05g1693 Cmu-Chr5:27039152 6.70E-105 transposed
Cmu05g1693 Cmu-Chr5:27039152 Cmu08g1293 Cmu-Chr8:25176407 8.70E-184 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6212 PF03791 KNOX2 1.90E-21 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1693 - - - 0.0