Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1721 ATGCCCCCAAGACCAGGTTGTAGGTCATTTGAGTGTGTAAGGAGAGCTTGGCATAGTGAAAGGCATCAACCCATTAGAGGTTCTCTTATTCAAGAGATTTTCAGGGTTGTTAGTGAAGTTCATTGCTGTGCTACTAAGAAGAATAAGGAGTGGCAAGAGAAGCTCCCCATTGTTGTTCTTAAAGCTGAAGAGATTTTGTATTCTAAAGCTGACTCTAAGGCTGAATACATGGATATTACTACACTGTGGGCCCGAATAAATGAAGCGATTAATACGATAATTCGGCTTGATAAGGACGCCGAAACTGGGGAGTTTCTTCATCCTTGTATTGAAGCTGCTCTCCATTTGGGTTGCATGTCGAGAAGATCGTCGAAGAGTAACCAAGTTAGTAATCTGAGGGGCTACCTTAATTCCTACACTCCACAGACGAGAAATGTACCGGAAGCCCAACCGAAAAACCAAAACCATGTTGTATGCTTTGCAAGCACTAGGAGTTTTGGGAAAATCTCTCCAGGGTTTCAAGGCTCTCAAATGAACTGGATTGATAACAATGGCTTGTTTCTTATGTCCAATAATTCTAAATTTGGATTTGGGTTTGTGACTACTCAAGATGTGACAATGTTTTTGCTAGCTATCATCCACACAAGCAGTTTAAGAGTAGTTTGGTCTGCAAATAGGGCCCTCCCTGTTGCTAATTCTGATGAGTTTACATTTGATGAGAAGGGAAATGCAATGTTGAAGAAAGGTTCTGCTGTTGTTTGGTCTACAAATTCCAGTGATAAAGGGGTTTCTGCCTTGGAGTTGCAAAACTCGGGAAATTTGGTTTTACGAGTGAATGATAGCAACGGTGGAATAGTTTGGCAGAGTTTTAGCCATCCAACTGATACTCTTTTATCAGGGCAGGATTTTGTTGAAGGAATGAGACTTGTGAGTGATCTTAGCAATAATAACTTGAGCTATTACCTTCACATGAAGTCTGGTGATATGACTCTCTCAGCAGGCTTCCAATCCCCACAGACTTACTGGTCTATGGCTAAGGAGAATCGTAAAACCGTTAATAAAAACGGCGGGGCAGTCTCCTCAGCAACTCTTGATGCGAATTCTTGGAAGTTCTACGATCGAAGCAAAGTCTTGCTATGGCAATTCATCTTCTCGAATAAAGCCAATGAAAATGCTACTTGGATAGCAGTTTTAGGAGATGATGGTTTCGTGTCTTTTTATAATCTTCAAGATTCTACTGTGGCTTCGACCACTAGGATACCTGAAGACTCTTGTAGCACACCGGAGCCGTGTGGCCCATATTTTATATGTTACAGTGAGAATCGATGCCAATGCCCTTCAGTTCTTAGCACAAATTCGAATTGCCAACCTGGGATTGTCTCTCCTTGTGATCAATCGAATGGAAGTATAGAGCTTGTAAATGCAGGGACTGGGGTCAAATATTTTGCACTTGGATTCCTACCATCTGCCTCAACGACTGATTTAAATGGTTGCAAAAACTCTTGCATGAGCAACTGTTCTTGCCGTGCATTGTTCTTCGAAAGCCGAACAGGGAACTGCTTCTTGTTGGACGATGTAGGTAGCTTTCAAAACTCCAATGAGGACACGGACTTTGTCTCATACATTAAGGTCTTGAACAACGGAGGCGATGGTGACAACAATGGTGCGAGTAGAAATGGTGGAATGAACTCTCATATTGTTGCGATCATCATTGTTTTTACCATGTTCGTCATTTGTGGTCTAGTTTATTTGGCATTTTGTTACTACAGGAAAAAGAAAAAACTGCCAGGAACTCCACAAGAGACTTCCGAGGATGATAACTTCTTGGATGGTTTGACAGGGGCGCCCATTCGTTATAGTTACGACGAACTTCAAACTGCAACCAATAATTTCTCTATAAAGCTTGGTCAAGGAGGATTTGGCTCAGTATATCAAGGAGTTCTACCTGATGGAACTCGGGTTGCTGTGAAGAAATTGGAAGCAGTCGGTCAGGGGAAGAAGGAGTTTCGAGCTGAAGTGAGCATAATTGGTAGTATCCATCATGTTCACTTGGTCAGGCTCAAGGGCTATTGTGCTGAAGGATCACACAAGCTTCTTGCTTATGAATACATGGGAAATGGGTCTTTGGACAAATGGATATTTAGGAAGAATAAAGAAGATTTTTTGTTAGATTGGAATACAAGATTCAATATTGCATTAGGAACAGCTAAAGGACTAGCTTACCTCCATGAAGATTGTGATGTGAAGATTATTCATTGTGACATCAAACCCGAAAATGTGCTTCTCGACGAAAAGTTCCTTGCAAAAGTATCAGACTTCGGCCTTGCGAAGCTAATGACACGCGAGCAGAGCCATGTCTTTACGACACTAAGAGGAACTCGAGGGTATCTTGCACCAGAGTGGATCACAAACTATGCCATTTCAGAGAAGAGTGACGTGTATAGCTACGGGATGGTGTTGCTCGAGATAATCGGAGGAAGAAAAAACTTTGACTCAACAGAAACTTCAGAAAAATGCCACTTCCCATCCTATGCTTTTAAAATGATGGAAGAAGGAAGACTCGAAAACATCATTGACTCGAATTTGGTAGTGAACGATGGTGATGAGAGAGTTTCTACAGCCATTAAAGTTGCATTGTGGTGCATACAAGAAGATATGCACCTTAGGCCACCAATGACTAGAGTAGTCCAAATGCTCGAAGGCCTTTGTGCCGTTCCTCCGCCTCCAACTTCCTCCCTGCTCGGTTCTCGCCTATTTTCAAGTTTCTTCAAATCAATCAGTGAGGGAGGAACCTCTTCCGGACCATCGGACTGCAACAGCGATGCGTATCTTTCGGCCATGAAGCTCTCCGGGCCAAGATGA 2862 42.56 MPPRPGCRSFECVRRAWHSERHQPIRGSLIQEIFRVVSEVHCCATKKNKEWQEKLPIVVLKAEEILYSKADSKAEYMDITTLWARINEAINTIIRLDKDAETGEFLHPCIEAALHLGCMSRRSSKSNQVSNLRGYLNSYTPQTRNVPEAQPKNQNHVVCFASTRSFGKISPGFQGSQMNWIDNNGLFLMSNNSKFGFGFVTTQDVTMFLLAIIHTSSLRVVWSANRALPVANSDEFTFDEKGNAMLKKGSAVVWSTNSSDKGVSALELQNSGNLVLRVNDSNGGIVWQSFSHPTDTLLSGQDFVEGMRLVSDLSNNNLSYYLHMKSGDMTLSAGFQSPQTYWSMAKENRKTVNKNGGAVSSATLDANSWKFYDRSKVLLWQFIFSNKANENATWIAVLGDDGFVSFYNLQDSTVASTTRIPEDSCSTPEPCGPYFICYSENRCQCPSVLSTNSNCQPGIVSPCDQSNGSIELVNAGTGVKYFALGFLPSASTTDLNGCKNSCMSNCSCRALFFESRTGNCFLLDDVGSFQNSNEDTDFVSYIKVLNNGGDGDNNGASRNGGMNSHIVAIIIVFTMFVICGLVYLAFCYYRKKKKLPGTPQETSEDDNFLDGLTGAPIRYSYDELQTATNNFSIKLGQGGFGSVYQGVLPDGTRVAVKKLEAVGQGKKEFRAEVSIIGSIHHVHLVRLKGYCAEGSHKLLAYEYMGNGSLDKWIFRKNKEDFLLDWNTRFNIALGTAKGLAYLHEDCDVKIIHCDIKPENVLLDEKFLAKVSDFGLAKLMTREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNFDSTETSEKCHFPSYAFKMMEEGRLENIIDSNLVVNDGDERVSTAIKVALWCIQEDMHLRPPMTRVVQMLEGLCAVPPPPTSSLLGSRLFSSFFKSISEGGTSSGPSDCNSDAYLSAMKLSGPR 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27358527 27368012 + CmPI595203_05g017210.1 Cmu05g1721 416635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1721 953 CDD STKc_IRAK 635 902 - -
Cmu05g1721 953 SMART blect_4 179 293 IPR001480 -
Cmu05g1721 953 ProSitePatterns Protein kinases ATP-binding region signature. 635 658 IPR017441 GO:0005524(InterPro)
Cmu05g1721 953 SUPERFAMILY alpha-D-mannose-specific plant lectins 219 344 IPR036426 -
Cmu05g1721 953 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 163 911 IPR051343 -
Cmu05g1721 953 ProSiteProfiles Protein kinase domain profile. 629 902 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1721 953 FunFam serine/threonine-protein kinase PBS1-like 598 703 - -
Cmu05g1721 953 SMART serkin_6 629 899 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1721 953 CDD B_lectin 181 293 IPR001480 -
Cmu05g1721 953 ProSiteProfiles PAN/Apple domain profile. 463 546 IPR003609 -
Cmu05g1721 953 CDD PAN_AP_plant 463 544 - -
Cmu05g1721 953 Pfam Protein kinase domain 634 897 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1721 953 ProSiteProfiles Bulb-type lectin domain profile. 173 289 IPR001480 -
Cmu05g1721 953 Gene3D - 179 292 IPR036426 -
Cmu05g1721 953 ProSitePatterns Serine/Threonine protein kinases active-site signature. 750 762 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1721 953 Gene3D Transferase(Phosphotransferase) domain 1 704 903 - -
Cmu05g1721 953 FunFam S-receptor-like kinase 5 704 908 - -
Cmu05g1721 953 Pfam D-mannose binding lectin 220 303 IPR001480 -
Cmu05g1721 953 SUPERFAMILY Protein kinase-like (PK-like) 613 900 IPR011009 -
Cmu05g1721 953 Gene3D Phosphorylase Kinase; domain 1 599 703 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1721 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1721 Cmu-Chr5:27358527 Cmu07g1242 Cmu-Chr7:27728334 1.50E-211 dispersed
Cmu08g1276 Cmu-Chr8:25069719 Cmu05g1721 Cmu-Chr5:27358527 1.00E-47 dispersed
Cmu08g0815 Cmu-Chr8:20423008 Cmu05g1721 Cmu-Chr5:27358527 5.50E-112 transposed
Cmu11g0306 Cmu-Chr11:3565185 Cmu05g1721 Cmu-Chr5:27358527 3.50E-15 wgd
Cmu05g1721 Cmu-Chr5:27358527 Cmu08g1274 Cmu-Chr8:25055841 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g487 . . . . . . . . Cmo05g00381 Cmo12g00290 Cma01g01505 Cma05g00380 . Car12g00322 Sed03g1615 Cpe07g00299 . Bhi04g00945 Tan02g2728 Cmetu03g0290 . Hepe10g0246 . Lcy13g1794 Cla05g01736 Cam05g1850 . Cco05g1922 Clacu05g1838 Cmu05g1721 Cre05g1852 . . Cone17ag1018 Cone20ag0672 Lsi04g02127 Csa03g04334 Chy04g00368 Cme03g01611 Blo17g00019 Blo18g00023 . Bda13g01260 . . . Bma02g00023 Sed13g2022 . . . Cma12g00341 . Car05g00323 Cpe11g00325 Cpe02g00450 Bhi09g02236 Tan01g3645 Cmetu04g1471 . Hepe01g2020 . . Cla08g01338 Cam08g1800 Cec08g1379 Cco08g1507 Clacu08g1494 . Cre08g1281 Lsi08g01209 . Chy03g01116 Cme04g00410
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001479 3 3 3 4 3 2 2 2 2 2 2 2 2 2 1 2 2 7 2 2 2 2 2 2 1 2 1 2 2 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75549 PF00069 Pkinase 9.70E-51 CL0016 Cmu PK