Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1725 ATGGTTTATTCAAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAGATTCGCCACCCACTGCTGAAGAGAAGGGTGTGGCTGGGGACATTTGACACAGCAGAGGATGCAGCTCGAGCGTATGATCAAGCAGCCATTTTGATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCATCTAAAGACCAATCTGAAGAAGCTAGCCATGGCCATGGTTCTTCTTCAATGTCCCCAAAAGCACTTTCAGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAATCCATCTCCCTCATTGACATGCCTGCGGCTCGACAGTGACAACGCTCACATCGGCGTATGGCAGAAGCGTGCAGGCACTCGAGCAACCTCTAATTGGGTCATGAGGATTGAGCTAGGGAAGAAAGAGATGCCGTCCCCGTCCCTGTCGCCTGAATTGACAAGCCAGGAAGCTGATGACCATGGGAATGGAATTGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCTACTTCAAGCTAA 573 49.74 MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSEEASHGHGSSSMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRATSNWVMRIELGKKEMPSPSLSPELTSQEADDHGNGIDEEDRIAMQMIEELLNWNCPLPSTSS 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27415672 27416838 + CmPI595203_05g017250.1 Cmu05g1725 416639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1725 190 MobiDBLite consensus disorder prediction 141 163 - -
Cmu05g1725 190 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Cmu05g1725 190 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1725 190 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 116 IPR050913 -
Cmu05g1725 190 MobiDBLite consensus disorder prediction 59 84 - -
Cmu05g1725 190 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1725 190 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1725 190 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1725 190 CDD AP2 6 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1725 190 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1725 190 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
Cmu05g1725 190 Pfam AP2 domain 6 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1725 Cmu-Chr5:27415672 Cmu07g1247 Cmu-Chr7:27783552 3.30E-49 dispersed
Cmu11g0292 Cmu-Chr11:3444758 Cmu05g1725 Cmu-Chr5:27415672 3.60E-56 wgd
Cmu05g1725 Cmu-Chr5:27415672 Cmu06g1175 Cmu-Chr6:22567054 1.50E-54 wgd
Cmu05g1725 Cmu-Chr5:27415672 Cmu07g1175 Cmu-Chr7:27039605 5.80E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6215 PF00847 AP2 3.80E-13 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1725 - - - 0.0