Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1751 ATGAGTAGGGAAAATGTTACTGTTCAAGTTGAAGAGTGCTCCGGCAGAATCACAAGAGCACGGGCGAAAGAGCTAAGCGAATCAGGAGGCATTCTATGCTCCTCAAAATCGTCTGGAGTTCAGAAACATATTCTACGAACTAACTCAAAAAGAATGGCATCTGATGACATTACGATTTGTTCAATTTCTTCCAATGGCCTTCCTAATAAAAGAAGAGCAGTGCTCAAGGATGTGACTAACATTTCCACCAAAGATTTTGATAAGAATTGCAGAAATGCTTCTAACATTCAGGGTGCCAAGCCAACTAGAAGAGTTTCTGCAAAAGCTAAGGCAAATGCTCCTTTAAATGCTCCTGTAGAAATTCTAGGTGCAGAAGAAGATGCAAACACAAGACTAGCTGAGGATTTATCTAAAATAAGGGTGGTAGAATCACGAGAAGTCTCTTTAAGAGGAACTTTGGATGGAAAAGAGAGAACCGTGCAAACTACGAGTCACACCAGCAGAGAATGTGGAGTTTCAGATATGATTCTCTCTGTATCTTCAGAAGAATCTATCCCTCAGCCAAATGAAAAATTTATCGCACCTGAACAATCGGCAGCATTAAGTGATAAAGGTGTTATAGACATTGATTCAAACTCCAAATGTCTTCAATCATGCAGCATATATGCTCCAGACATATATGACAGGATACGTGTGACAGAGCTTGATCAAAGGGCCTCAACTACCTATATGGAACAGTTGCAGCAAGATATCACTGCAAACATGCGAGGAATACTGGTTGATTGGCTTGTAGAGGTGTCTGAAGAATATAATCTAGTTTCAGATACACTCTATCTCACTGTGAATGTCATTGATCGGTTTCTCTCTCAAAATTATATTGAAAAAAAGCGACTACAACTTGTTGGTGTTGCAAGCATGCTTATTGCATCAAAATATGAGGAGATCTGTGCACCGCGGGTGGAAGATTTCTGCTTCATTACAGATAATACTTACACAAAAGCAGAGGTAGTAGAAATGGAGAGTGAAGTTTTGAACTTACTGCACTTTCGGCTATCTGTTCCCACTACAAAGACATTTCTAAGGAGATTTATACAATCAGCTCATGCTTCTTACAAGGTTCCTTGCATTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGACTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATCGCGGCGTCTGCCGTTTTTCTTGCGAGATGGACACTTGACCAATCGGATCATCCGTGGAATCCAACTCTAGAGCACTATACCAGTTACAACGTTTCTCAGCTGAAAACTGCTGTGCTTGCCCTCCAAGACTTGCAACTTAACACCAGTGCTTCCTCGCTAAATGCCATACGTCAGAAGTATAGACAACCGAAGTTCAAATGCGTAGCGACGTTAACAGCTACGAAATCGGTTCTATCCCTATTTTGA 1455 40.76 MSRENVTVQVEECSGRITRARAKELSESGGILCSSKSSGVQKHILRTNSKRMASDDITICSISSNGLPNKRRAVLKDVTNISTKDFDKNCRNASNIQGAKPTRRVSAKAKANAPLNAPVEILGAEEDANTRLAEDLSKIRVVESREVSLRGTLDGKERTVQTTSHTSRECGVSDMILSVSSEESIPQPNEKFIAPEQSAALSDKGVIDIDSNSKCLQSCSIYAPDIYDRIRVTELDQRASTTYMEQLQQDITANMRGILVDWLVEVSEEYNLVSDTLYLTVNVIDRFLSQNYIEKKRLQLVGVASMLIASKYEEICAPRVEDFCFITDNTYTKAEVVEMESEVLNLLHFRLSVPTTKTFLRRFIQSAHASYKVPCIELEFLANYLAELTLVEYSFLKFLPSLIAASAVFLARWTLDQSDHPWNPTLEHYTSYNVSQLKTAVLALQDLQLNTSASSLNAIRQKYRQPKFKCVATLTATKSVLSLF 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27610905 27616057 + CmPI595203_05g017510.1 Cmu05g1751 416665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1751 484 Pfam Cyclin, C-terminal domain 354 475 IPR004367 -
Cmu05g1751 484 SUPERFAMILY Cyclin-like 217 351 IPR036915 -
Cmu05g1751 484 Gene3D - 225 473 - -
Cmu05g1751 484 PANTHER CYCLINS 203 465 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cmu05g1751 484 CDD CYCLIN_AtCycA-like_rpt2 354 468 - -
Cmu05g1751 484 SMART cyclin_7 358 446 IPR013763 -
Cmu05g1751 484 SMART cyclin_7 261 345 IPR013763 -
Cmu05g1751 484 FunFam Cyclin A1 341 473 - -
Cmu05g1751 484 ProSitePatterns Cyclins signature. 256 287 IPR048258 -
Cmu05g1751 484 SUPERFAMILY Cyclin-like 353 478 IPR036915 -
Cmu05g1751 484 Pfam Cyclin, N-terminal domain 225 352 IPR006671 -
Cmu05g1751 484 PIRSF Cyclin_A_B_D_E 34 483 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cmu05g1751 484 FunFam Mitotic cyclin 6 239 339 - -
Cmu05g1751 484 SMART Cyclin_C_2 354 477 IPR004367 -
Cmu05g1751 484 Gene3D - 239 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1751 Cmu-Chr5:27610905 Cmu09g0226 Cmu-Chr9:2348197 1.10E-112 dispersed
Cmu02g2241 Cmu-Chr2:36047677 Cmu05g1751 Cmu-Chr5:27610905 1.60E-45 transposed
Cmu04g0623 Cmu-Chr4:19952342 Cmu05g1751 Cmu-Chr5:27610905 1.90E-42 transposed
Cmu09g2173 Cmu-Chr9:37826770 Cmu05g1751 Cmu-Chr5:27610905 8.80E-35 transposed
Cmu11g1856 Cmu-Chr11:30695713 Cmu05g1751 Cmu-Chr5:27610905 5.50E-47 transposed
Cmu05g1751 Cmu-Chr5:27610905 Cmu08g1228 Cmu-Chr8:24647123 5.90E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1751 K06627 - csv:101204275 864.759