Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1783 ATGAGCTCGAGCTTCAAAATTCAGGCTCCTCTTCTTCTACCGTTCTACTTCCTTTCCTCCGATGCCGAGACTGAGACGAATCATGGACTATTTAGAGCTAAGGCTCGGAGAGTCAACTTTATTAGCGGGTCGGGCCCACGGCCCATGGTGTTAAAACAGGGCCAGCCCATAAATTTACATCTTGGCGGACCATTGAAACAGGGATTTGGAAGAATGTTCTCCAGTACCCAGTTTGATTCCGCCAGCGGATTTACGTCTTCTCAGTCCAATGAATCCTCTACAACGAAGAGTCGAGAATCGCCGGGCTTGGTTCCGGTAACCGTGAAACAGATTAGCGAAGCTTCACATTCTGGCGAAGAGAAGGCCAACTTTGTAATCAACGGCGTTGACATTACAAATGTTACAGTCGTTGGGAAGGTATCAGAGAAAGCTGAAAGGAATACGGACATCACATTCACTATAGATGATGGAACAGGAACAATTGGTTGCAAAAGATGGGTAAACGACACTTTTGACACCAAGCAAATGGAGGAAATACAAGATGGAATGTATGTACGGGTGAATGGGCATTTGAAAATATTTCAAAGTAACAAGCAAATTTTTGCATTCTCCGTAAGGCCTGTAACAAATTTTGATGAAATTACCTTCCACTTTATTGAATGCATACACGACCACTTGCGGAATTCCAAGTTACAGAATCTCAATGGCGAAGGATCAACACAGTTCCAATCCTCAGATTCAACTCTGAAGACTCCAGTGCAGAATGGCTCGAGTGGATATATGACAGCATCTTCTGGAATACCATCTGAGCAGCACACTGTTGATGTTAAAAAGAACTGTGATGAATTGGTTCTCGACTATCTGCAGCTGCCCTCCAGCGTTGCAAAAGAAAGAGGGATACACAGAGATGAACTTTCCCAACAACTGAAAATTCCAATGGAGAAAATATTGAACTCCATAAGGTCTCTTGAAGATGAAGGTTTGATATATTCCACCATAGATGAGTTTCACTTCAAGTCTGCCGCATAG 1029 43.34 MSSSFKIQAPLLLPFYFLSSDAETETNHGLFRAKARRVNFISGSGPRPMVLKQGQPINLHLGGPLKQGFGRMFSSTQFDSASGFTSSQSNESSTTKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTVVGKVSEKAERNTDITFTIDDGTGTIGCKRWVNDTFDTKQMEEIQDGMYVRVNGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQNLNGEGSTQFQSSDSTLKTPVQNGSSGYMTASSGIPSEQHTVDVKKNCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27947882 27955198 - CmPI595203_05g017830.1 Cmu05g1783 416697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1783 342 CDD RPA2_DBD_D 133 226 - -
Cmu05g1783 342 Gene3D - 274 342 IPR036388 -
Cmu05g1783 342 MobiDBLite consensus disorder prediction 80 103 - -
Cmu05g1783 342 FunFam Replication protein A 32 kDa subunit 273 342 - -
Cmu05g1783 342 FunFam replication protein A 32 kDa subunit A-like 96 230 - -
Cmu05g1783 342 MobiDBLite consensus disorder prediction 80 101 - -
Cmu05g1783 342 SUPERFAMILY Nucleic acid-binding proteins 103 229 IPR012340 -
Cmu05g1783 342 SUPERFAMILY Winged helix DNA-binding domain 277 340 IPR036390 -
Cmu05g1783 342 Gene3D - 100 231 IPR012340 -
Cmu05g1783 342 PANTHER REPLICATION PROTEIN A-RELATED 81 340 IPR040260 GO:0000724(PANTHER)|GO:0000781(PANTHER)|GO:0003697(PANTHER)|GO:0005662(PANTHER)|GO:0006260(PANTHER)|GO:0006289(PANTHER)|GO:0035861(PANTHER)
Cmu05g1783 342 Pfam OB-fold nucleic acid binding domain 134 207 IPR004365 GO:0003676(InterPro)
Cmu05g1783 342 Pfam Replication protein A C terminal 225 335 IPR014892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1783 K10739 - - csv:101220176 479.174
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1783 Cmu-Chr5:27947882 Cmu06g1404 Cmu-Chr6:25197099 2.00E-57 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g214 . . . Bda03g00040 . . Bma04g00039 . . . . . Car09g00447 . . . Cpe06g00385 . . . . . . . Cla05g01790 Cam05g1909 Cec05g1920 Cco05g1983 Clacu05g1902 Cmu05g1783 Cre05g1911 . Cone7ag1755 . . Lsi04g02184 Csa03g04392 Chy04g00310 . . . . . . Bpe04g00030 . . Sed05g1650 Cmo01g01597 Cmo09g00511 . . . . . . Bhi09g02337 Tan01g3718 Cmetu04g2121 . Hepe01g2077 Mch11g0615 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009047 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34