Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1784 ATGCAATTTCGTCGGAAGAACAGGTTCTACAGATTTTACAAGGTTAAGTCGGATAAATTGCCGATTCGGCTGGTTACAACTAAATGTTACGCGGGAAAAATGCCTCGCAAGGTGAGCCACGGGTTAGATTACGATGAAGATTACGATGAAGATTACGATGAGTACGACGATTACGATTATTACGATAACGATTTCGATGCAGAAGAAAAGGTAACAGAAAAAACACCTGAGACTAAGGAAGAAAGAAAGGAGCATAAGCTTTGGCGATGCCCGATTTGCACTTACGACAATGAAGACAGTTTTTCTGTCTGTGATATATGTGGGGTTCTGCGCAACCCTTTGGTCAACAACAGAAATACTCCTGATGATGGAACAGTTGAGAACATCTGCAAAGACTCTGGAGTATCCAAAATGGCCAAGTCTCTCTTTGCATCGTTGCCAAATCAGATACCCAAAAGGGCTGTAAATTTTCAAGAGCAGGACGATAAAATTGTGGAAGAAAGAGAAGAGAACATCCACAAGATTGGAAATATCCGGGGCCATTTGCATGAATTCCATAATGCTTTTAGTACCTGTAGTCATTTCCGTACTAATATAGTCCCCTTCAAGTTTGACATTCCTTCCCCAGATGATGTGGTTTCTAATGGATTGCGTTCCTCGAAAGTTGGTTTAAAAGCAGTCAGCCACAACAACTTCAACTCTTCAATATTATCTTCAGACATCACCAAGAAATCTGCAAATAATGCAGCATTGACTTCAAAAAGTGCACACAGCTCATCTACTGTATTGCCAACGAGCAAATCAGGCAGTATAGGAGATACACAGTTGAGTACCAAAAGTTCAGACAAATCAGGGATATCAATTGGTAAAAGTACAATGGTTAATGAAGAACACAATGCATCAATTAGTGTAACAAAAAATTTACAACCACGTGATAACCGGTCGTCAAGCACTTCCACATCAAAGTCAGCAGGCAAATTTGGCAGCATGGATGAGAGCCCCAACCCTTCTGTCGAGCAGGAAAAGCCCCAAAGTCTTGCCGGTGGTTTGAACAACATGGTTCTAAATGTCAAATCTGCCTATGCAAATTATATTAGTGGGCTAGGAAAAACGTCAAATGCGCAGTATAAGCATGATAAATGGATGCTACCTGATAAAGCTGTAGACACGCTGACTCAGCTGAATCTTGCTATAGTTGGTCATGTTGATTCTGGAAAATCTACACTCTCAGGAAGACTGCTGCACCTATTGGGACGTGTATCCCAAAAGGAAATGCACAAATATGAAAAAGAGGCGAAGTCCCTGGGCAAGGGTTCCTTTGCTTATGCCTGGGCACTGGATGAGAGTGCAGAAGAAAGAGAGAGAGGAATAACTATGACTGTTGGTGTTGCTTATTTTGATTCTAAAAGATATCATGTTGTTGTGCTCGATTCCCCAGGCCATAAAGATTTTGTTCCAAACCTGATATCTGGGGCCACACAAGCTGATGCCGCGGTTCTTGTTATAGATGCATCTGTTGGTGCATTTGAGGCTGGTATGGATGGTTCAAAGGGGCAAACAAGGGAACATGTGCAATTAATCAGGAGCTTTGGTGTAGATCAGATTATTGTTGCAGTTAACAAAATGGATGTGGTGGAGTACTCCAAAGATCGATATGAATTTATTAAGCTGCAACTTGGAACCTTTATTCGTTCATGTGGTTATAAAGATTCATCATTGTCTTGGATTCCATTGAGTGCCATGGCAAATCAGAATCTAGTGACTGCCCCTTCTGATGTTCAATTTTTGTCCTGGTATCGTGGACCTAATCTTTTGGAGGCGATTGATTCCCTTCAACCACCCACTCGAGAATTCTGTAAGCCACTGCTTATGCCGATATGTGATGTAGTTAGATCACTTTCACTGGGACAAGTGTCTGCCTGTGGCAAACTGGAAGCTGGAGCTCTCCAATCTGGATCTAAGGTTCTTATCATGCCATCTGGAGATAAAGCAACCGTCCGCACTTTAGAACGCAATTCTCAGGCTTGCAAAATAGCAAGAGCGGGGGACAATGTGACTGTTTCTCTACAAGGAGTTGAAGCAAGTAGCGTGATGGCTGGGGGCGTCCTATGCCATCCTGATTTTCCTGTTGCTGTTGCAAGACATTTGGAATTGAAGATTCTCACCTTGGAATTTGCAACACCGATATTAATAGGATCTCAGTTGGAAATTCATATACACCACATGAAGGAGGCTGCTAGAGTTTCAAGGATAGTGTCATTACTCGATTCCAAGACGGGAAAGGTCACGAAGAAGGCACCGCGTTGTCTCAGTGCTAAACAAAGTGCAGTGATTGAGGTCGTTTTACAAAGCCCAGTTTGTGTTGAAGCATTCTCAACTAGTCGAGCTCTCGGGCGGGTATTTTTGAGAGCGATGGGTAGAACCATAGCTGTCGGCATTGTAACCCAACTAATTGGAGATCCTGAATAA 2469 42.61 MQFRRKNRFYRFYKVKSDKLPIRLVTTKCYAGKMPRKVSHGLDYDEDYDEDYDEYDDYDYYDNDFDAEEKVTEKTPETKEERKEHKLWRCPICTYDNEDSFSVCDICGVLRNPLVNNRNTPDDGTVENICKDSGVSKMAKSLFASLPNQIPKRAVNFQEQDDKIVEEREENIHKIGNIRGHLHEFHNAFSTCSHFRTNIVPFKFDIPSPDDVVSNGLRSSKVGLKAVSHNNFNSSILSSDITKKSANNAALTSKSAHSSSTVLPTSKSGSIGDTQLSTKSSDKSGISIGKSTMVNEEHNASISVTKNLQPRDNRSSSTSTSKSAGKFGSMDESPNPSVEQEKPQSLAGGLNNMVLNVKSAYANYISGLGKTSNAQYKHDKWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSLGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHVVVLDSPGHKDFVPNLISGATQADAAVLVIDASVGAFEAGMDGSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKDRYEFIKLQLGTFIRSCGYKDSSLSWIPLSAMANQNLVTAPSDVQFLSWYRGPNLLEAIDSLQPPTREFCKPLLMPICDVVRSLSLGQVSACGKLEAGALQSGSKVLIMPSGDKATVRTLERNSQACKIARAGDNVTVSLQGVEASSVMAGGVLCHPDFPVAVARHLELKILTLEFATPILIGSQLEIHIHHMKEAARVSRIVSLLDSKTGKVTKKAPRCLSAKQSAVIEVVLQSPVCVEAFSTSRALGRVFLRAMGRTIAVGIVTQLIGDPE 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27955338 27962649 + CmPI595203_05g017840.1 Cmu05g1784 416698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1784 822 ProSitePatterns Zinc finger RanBP2-type signature. 88 107 IPR001876 -
Cmu05g1784 822 FunFam Translation elongation factor EF-1 618 708 - -
Cmu05g1784 822 CDD HBS1_C_III 709 817 - -
Cmu05g1784 822 Gene3D Translation factors 619 708 - -
Cmu05g1784 822 Pfam Elongation factor Tu GTP binding domain 394 613 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu05g1784 822 SUPERFAMILY Ran binding protein zinc finger-like 84 111 IPR036443 -
Cmu05g1784 822 MobiDBLite consensus disorder prediction 252 344 - -
Cmu05g1784 822 FunFam elongation factor 1-alpha isoform X4 712 821 - -
Cmu05g1784 822 CDD EF1_alpha 395 614 - -
Cmu05g1784 822 Pfam GTP-eEF1A C-terminal domain-like 716 815 IPR054696 -
Cmu05g1784 822 PANTHER TRANSLATION FACTOR 392 815 IPR050100 GO:0003924(PANTHER)|GO:0006412(PANTHER)
Cmu05g1784 822 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 715 818 IPR009001 -
Cmu05g1784 822 FunFam Elongation factor 1 alpha-like protein 384 615 - -
Cmu05g1784 822 Gene3D - 385 615 IPR027417 -
Cmu05g1784 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 630 IPR027417 -
Cmu05g1784 822 SUPERFAMILY Translation proteins 613 708 IPR009000 -
Cmu05g1784 822 PRINTS GTP-binding elongation factor signature 490 501 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu05g1784 822 PRINTS GTP-binding elongation factor signature 395 408 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu05g1784 822 PRINTS GTP-binding elongation factor signature 454 462 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu05g1784 822 PRINTS GTP-binding elongation factor signature 535 544 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu05g1784 822 PRINTS GTP-binding elongation factor signature 474 484 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu05g1784 822 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 391 622 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu05g1784 822 Pfam Elongation factor Tu domain 2 641 704 IPR004161 GO:0005525(InterPro)
Cmu05g1784 822 Gene3D Translation factors 712 819 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1784 Cmu-Chr5:27955338 Cmu09g1956 Cmu-Chr9:35637359 3.60E-76 dispersed
Cmu05g1784 Cmu-Chr5:27955338 Cmu02g2090 Cmu-Chr2:34558785 2.80E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1784 K14416 - csv:101219939 1355.89