Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu05g1792 | ATGGCCAGCCCTATCACTCTCCAAGAGATTCGAAACGAGTCCGTTGATCTGGAACGTATTCCCATCGACGATGTGTTCGAGAAGCTGAAATGTTCAAAAGAAGGACTCACTTCAGAGGAAGGGGCCAATCGGCTTCAAGTTTTTGGACCCAACAAACTCGAAGAGAAAAAGGAAAGCAAAATTCTGAAATTTCTGGGGTTTATGTGGAATCCCCTCTCTTGGGTTATGGAAGTAGCTGCTATAATGGCTATTGTCTTAGCAAACGGGGGTGGAAGGCCAGCGGATTGGCAGGATTTTGTGGGAGTCATTGCCCTGCTTTTTATCAACTCAACCATCTCTTTTATTGAAGAGAATAATGCAGGGAACGCAGCTGCAGCCCTTATGGCTGGTCTTGCTCCAAAGACCAAGGTTCTCAGAGATGGTCATTGGAGTGAACAAGATGCTGCCATTCTTGTTCCCGGAGATATAATAAGCATCAAACTGGGAGATATAATCCCTGCTGATGCACGTCTTCTCCAAGGGGACCCTTTGAAAATTGACCAATCTGCACTAACTGGCGAGTCTCTTCCTGTTACCAAAAACCCTTCAGATGAAGTTTTCTCAGGATCAACCTGTAAACAGGGAGAAATTGAAGCAATAGTGATTGCCACTGGTGTCCATACCTTCTTTGGTAAAGCTGCTCATTTAGTGGACAACACCAATCAAGTGGGGCATTTCCAAAAAGTTCTAACTGCCATTGGGAATTTCTGTATTTGCTCAATTGCCATTGGAATTATAATTGAGATCATTGTCATGTACCCAATTCAACACCGTGCGTATAGGGATGGCATTGACAATTTGCTGGTGCTTTTAATTGGAGGAATTCCTATTGCCATGCCTACTGTTTTGTCTGTCACTATGGCTATTGGTTCCCACCGACTTTCTAAGCAAGGTGCAATTACAAAACGGATGACTGCCATTGAGGAGATGGCTGGCATGGATGTCCTCTGCAGTGACAAGACTGGAACATTAACTTTGAATAAGCTCACTGTTGACCAATCCTTGACTGAAGTCCTTGTAGGGGGTATGGATAAAGAACAAGTCATTCTTCTTGCAGCAAGGGCTTCTAGAACAGAAAATCAGGATGCCATTGACGCTGCTATTGTTGGGATGTTGGCAGATCCAAAAGAAGCGCGAGCTGGTATCAGAGAGGTTCATTTTTTTCCATTCAACCCTGTAGATAAGAGAACTGCCCTGACTTATATTGATTCTCATGATAATTGGCATCGAGTTAGCAAAGGTGCTCCAGAGCAGATTTTAAATCTTTGCAATTCTAGCGAACCCATCAGGAAAAAAGTTCATGGAGTGATTGATAAGTTTGCTGAATGTGGGCTCCGATCTCTGGGTGTTGCTAGACAGGAAGTACCTGAGAGAACCAAAGAAAGCCCCGGAGAACCGTGGCAACTTGTTGGTCTATTAGCTTTATTTGATCCTCCCAGGCATGATAGCGCAGAAACCATTCGAAGGGCTCTAAATCTTGGAGTAAATGTCAAGATGATTACTGGGGACCAACTGGCCATTGCCAAGGAAACCGGTCGGAGACTTGGTATGGGATCAAATATGTACCCTTCATCTGCATTACTCTCTCAAGACAGGGGTGCATCCGCAGATTCCCTTCCAGTGGACGAGTTGATTGAAACAGCTGATGGATTTGCTGGAGTATTTCCAGAACACAAGTATGAAATTGTGAGAAGGTTACAAGAGAAGAAACATATTTGTGGAATGACTGGAGATGGCGTAAATGATGCCCCTGCACTAAAAAAGGCAGATATTGGAATTGCTGTTGCTGATGCAACTGATGCAGCCAGAAGCGCTTCTGATATCGTCCTCACTGAACCTGGATTGAGTGTCATAATTAGTGCGGTGCTGACCAGCAGGGCAATTTTCCAAAGGATGAAGAATTATACGATTTATGCTGTTTCCATCACCATCCGTATAGTGTTTGGTTTTCTGTTGATTGCTTTGATTTGGAGGTTTGATTTCGCTCCATTCATGGTTTTAATCATAGCTATTCTTAATGATGGAACAATCATGACTATTTCGAAGGATCGAGTTAAGCCTTCTCCACAGCCTGACAGCTGGAAGTTGAAGGAAATTTTCGCTACTGGCATCGTGTTAGGAGGATACTTGGCCTTGATGACAGTAGTGTTTTTTTGGATCATGAAAGATACTGACTTTTTCACGAACACGTTTCACGTACCATCTCTAAGGAACAACGACCCGAAAATGATGGCAGCATTGTATCTACAAGTCAGTATCGTGAGTCAGGCCCTTATTTTCGTCACACGGTCTCGTAGTTGGTCCTTCGTTGAACGTCCTGGAATTTTGTTAGTGGTTGCTTTCATATTGGCCCAGCTGATTGCAACTATAATAGCAGTGTATGGAAAATGGGATTTTGCAAGGATGCATGGCGCTGGCTGGGGATGGGCTGGTGTCATTTGGCTATACAGTTTAATAACTTATATCCCTCTCGATATTCTCAAATTCACCATTCGCTATGCTCTCAGTGGACGAGCTTGGAACAACCTTTTGCAAAATAAGACTGCTTTCACTACAAAGAAAGATTATGGCAAAGAAGAGAGAGAAGCACAATGGGCTACCACACAAAGAACTATTCATGGTCTTCAACCACCTCAAACCAGCAACACTGCTTCTGATAGAATCAGTTGTGGCGGTGAGCTTTCCGAAATCGCCGAGCAAGCCAAGCGACGAGCTGAAATTGCAAGGCTCCGCGAGTTGCACACTCTGAAAGGTCGGGTCGAGTCGGTAGTGAAGCTGAAAGGTCTAGACATTGATACTATTAATCAACATTATACGGTTTAA | 2862 | 43.89 | MASPITLQEIRNESVDLERIPIDDVFEKLKCSKEGLTSEEGANRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEVAAIMAIVLANGGGRPADWQDFVGVIALLFINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGHWSEQDAAILVPGDIISIKLGDIIPADARLLQGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAIVIATGVHTFFGKAAHLVDNTNQVGHFQKVLTAIGNFCICSIAIGIIIEIIVMYPIQHRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSKQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDQSLTEVLVGGMDKEQVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFFPFNPVDKRTALTYIDSHDNWHRVSKGAPEQILNLCNSSEPIRKKVHGVIDKFAECGLRSLGVARQEVPERTKESPGEPWQLVGLLALFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGSNMYPSSALLSQDRGASADSLPVDELIETADGFAGVFPEHKYEIVRRLQEKKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLLIALIWRFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGIVLGGYLALMTVVFFWIMKDTDFFTNTFHVPSLRNNDPKMMAALYLQVSIVSQALIFVTRSRSWSFVERPGILLVVAFILAQLIATIIAVYGKWDFARMHGAGWGWAGVIWLYSLITYIPLDILKFTIRYALSGRAWNNLLQNKTAFTTKKDYGKEEREAQWATTQRTIHGLQPPQTSNTASDRISCGGELSEIAEQAKRRAEIARLRELHTLKGRVESVVKLKGLDIDTINQHYTV | 953 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 28050821 | 28055885 | + | CmPI595203_05g017920.1 | Cmu05g1792 | 416706 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu05g1792 | 953 | Pfam | haloacid dehalogenase-like hydrolase | 326 | 603 | - | - | |
| Cmu05g1792 | 953 | NCBIfam | HAD-IC family P-type ATPase | 564 | 679 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cmu05g1792 | 953 | NCBIfam | HAD-IC family P-type ATPase | 103 | 349 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cmu05g1792 | 953 | SFLD | C1.7: P-type atpase like | 312 | 640 | - | - | |
| Cmu05g1792 | 953 | PRINTS | H+-transporting ATPase (proton pump) signature | 589 | 605 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cmu05g1792 | 953 | PRINTS | H+-transporting ATPase (proton pump) signature | 761 | 782 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cmu05g1792 | 953 | PRINTS | H+-transporting ATPase (proton pump) signature | 446 | 464 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cmu05g1792 | 953 | PRINTS | H+-transporting ATPase (proton pump) signature | 620 | 645 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cmu05g1792 | 953 | PRINTS | H+-transporting ATPase (proton pump) signature | 561 | 577 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cmu05g1792 | 953 | SFLD | p-type atpase | 312 | 640 | IPR044492 | - | |
| Cmu05g1792 | 953 | Gene3D | - | 133 | 217 | - | - | |
| Cmu05g1792 | 953 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 16 | 848 | IPR023298 | - | |
| Cmu05g1792 | 953 | Gene3D | - | 95 | 816 | - | - | |
| Cmu05g1792 | 953 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 332 | 338 | IPR018303 | - | |
| Cmu05g1792 | 953 | Gene3D | - | 905 | 953 | - | - | |
| Cmu05g1792 | 953 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 18 | 876 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Cmu05g1792 | 953 | Pfam | E1-E2 ATPase | 132 | 310 | - | - | |
| Cmu05g1792 | 953 | SUPERFAMILY | Calcium ATPase, transduction domain A | 133 | 230 | IPR008250 | - | |
| Cmu05g1792 | 953 | FunFam | Plasma membrane ATPase | 133 | 217 | - | - | |
| Cmu05g1792 | 953 | SUPERFAMILY | HAD-like | 326 | 636 | IPR036412 | - | |
| Cmu05g1792 | 953 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 35 | 807 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Cmu05g1792 | 953 | Gene3D | - | 327 | 626 | IPR023214 | - | |
| Cmu05g1792 | 953 | PRINTS | P-type cation-transporting ATPase superfamily signature | 330 | 344 | - | - | |
| Cmu05g1792 | 953 | PRINTS | P-type cation-transporting ATPase superfamily signature | 589 | 608 | - | - | |
| Cmu05g1792 | 953 | PRINTS | P-type cation-transporting ATPase superfamily signature | 484 | 495 | - | - | |
| Cmu05g1792 | 953 | PRINTS | P-type cation-transporting ATPase superfamily signature | 180 | 194 | - | - | |
| Cmu05g1792 | 953 | PRINTS | P-type cation-transporting ATPase superfamily signature | 612 | 624 | - | - | |
| Cmu05g1792 | 953 | PRINTS | P-type cation-transporting ATPase superfamily signature | 506 | 516 | - | - | |
| Cmu05g1792 | 953 | CDD | P-type_ATPase_H | 35 | 842 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Cmu05g1792 | 953 | Gene3D | - | 342 | 489 | IPR023299 | GO:0000166(InterPro) | |
| Cmu05g1792 | 953 | SMART | Cation_ATPase_N_a_2 | 16 | 88 | IPR004014 | - | |
| Cmu05g1792 | 953 | FunFam | ATPase 4 plasma membrane-type | 577 | 816 | - | - | |
| Cmu05g1792 | 953 | FunFam | Plasma membrane ATPase | 481 | 637 | - | - | |
| Cmu05g1792 | 953 | FunFam | Plasma membrane ATPase | 342 | 489 | - | - | |
| Cmu05g1792 | 953 | Pfam | Cation transporter/ATPase, N-terminus | 19 | 82 | IPR004014 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu05g1792 | Cmu-Chr5:28050821 | Cmu11g1213 | Cmu-Chr11:23652328 | 0.00E+00 | dispersed | |
| Cmu05g1792 | Cmu-Chr5:28050821 | Cmu08g1600 | Cmu-Chr8:27650947 | 2.30E-58 | wgd | |
| Cmu05g1792 | Cmu-Chr5:28050821 | Cmu08g1205 | Cmu-Chr8:24458733 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu05g1792 | K01535 | - | csv:101219224 | 1710.66 |