Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1806 ATGGAGGAATATAATAATGAAGTAAACGAGAACTCAAATGGGAGAGGGAATTTCTTGTATGGATCAGGGAATTCTTCATCAGGTAATTTTGGAAGATCAACGGCTGAGATGGGTGTTGTTAATACCTTTCATCTTCAACATGGAACCGACTGTTTTCAACCGCACCACCCGATTGTCAAAACTGAAGCCACTACTTCACACCATCAGCTTCTCAAATTTCATTACCCTTTAATCAGACCACCACCACCAGCTCACCCGCCGCCGACATGTCGTCCTGAACAAAACGGTGTCGTTGATGTTGAAGCCATTAAGGCTAAAATCCTTGCTCATCCTCAATACTCCAGCCTCCTCGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCGGCTGGTGGCGGCCCGGCAAGAATTTGAAGCACGGCAGCGTTCTTCCATGGTTTCTGGAGATACCACAAAGGATCCAGAGCTTGATCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGGGAGGAACTTTCAAGGCCGATTCAAGAAGCCATGGATTTCATGAGAAGGATTGAATCTCAGCTCACTTCTCTCTGTAATGGCCCAGTTCGGATCTTCAATTCCGATGAGAAGTGTGAAGGTATGGGATCGTCTGAGGAGGAACAAGACAATAGCGGCGGAGAAACCGAACTCCCGGAGATAGATCCTCGTGCTGAAGATAGAGAATTGAAGAATCACCTACTGAGGAAGTACAGTGGTTACCTGAGCAGTCTCAAGCAAGAACTTTCTAAGAAAAAGAAAAAAGGAAAACTCCCAAAAGATGCAAGGCAGAAACTGCTTAATTGGTGGGAGTTACATTACAAATGGCCATACCCCTCAGAGACAGAGAAGGTGGCGTTAGCTGAATCCACTGGGTTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAGTTCATGGTGATGGATGGGCTTCATCCTCCCAATGCCGCCCTATATATTGACGGTCACTACATGACCGATGGCCATTATCGGCTCGGACCATGA 1092 46.15 MEEYNNEVNENSNGRGNFLYGSGNSSSGNFGRSTAEMGVVNTFHLQHGTDCFQPHHPIVKTEATTSHHQLLKFHYPLIRPPPPAHPPPTCRPEQNGVVDVEAIKAKILAHPQYSSLLEAYMECQKVGAPPQVVERLVAARQEFEARQRSSMVSGDTTKDPELDQFMEAYYDMLVKYREELSRPIQEAMDFMRRIESQLTSLCNGPVRIFNSDEKCEGMGSSEEEQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNAALYIDGHYMTDGHYRLGP 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28165876 28169801 - CmPI595203_05g018060.1 Cmu05g1806 416720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1806 363 SUPERFAMILY Homeodomain-like 266 341 IPR009057 -
Cmu05g1806 363 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 103 335 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu05g1806 363 Gene3D - 270 332 - -
Cmu05g1806 363 SMART KNOX1_2 101 145 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu05g1806 363 CDD homeodomain 277 329 IPR001356 GO:0003677(InterPro)
Cmu05g1806 363 Pfam ELK domain 245 266 IPR005539 GO:0003677(InterPro)
Cmu05g1806 363 FunFam Homeobox protein knotted-1-like 2 270 332 - -
Cmu05g1806 363 ProSiteProfiles ELK domain profile. 245 265 IPR005539 GO:0003677(InterPro)
Cmu05g1806 363 SMART KNOX2_2 152 203 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu05g1806 363 MobiDBLite consensus disorder prediction 1 20 - -
Cmu05g1806 363 Pfam Homeobox KN domain 285 324 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu05g1806 363 SMART ELK_2 161 181 IPR005539 GO:0003677(InterPro)
Cmu05g1806 363 SMART ELK_2 245 266 IPR005539 GO:0003677(InterPro)
Cmu05g1806 363 SMART HOX_1 267 332 IPR001356 GO:0003677(InterPro)
Cmu05g1806 363 Pfam KNOX1 domain 102 144 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu05g1806 363 ProSiteProfiles 'Homeobox' domain profile. 265 328 IPR001356 GO:0003677(InterPro)
Cmu05g1806 363 MobiDBLite consensus disorder prediction 212 241 - -
Cmu05g1806 363 Pfam KNOX2 domain 157 202 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu05g1806 363 ProSitePatterns 'Homeobox' domain signature. 303 326 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2113 Cmu-Chr1:33931257 Cmu05g1806 Cmu-Chr5:28165876 9.70E-78 dispersed
Cmu02g0224 Cmu-Chr2:2125033 Cmu05g1806 Cmu-Chr5:28165876 1.70E-72 dispersed
Cmu02g1487 Cmu-Chr2:28630265 Cmu05g1806 Cmu-Chr5:28165876 9.20E-64 dispersed
Cmu05g1693 Cmu-Chr5:27039152 Cmu05g1806 Cmu-Chr5:28165876 4.20E-29 dispersed
Cmu05g1806 Cmu-Chr5:28165876 Cmu05g2599 Cmu-Chr5:34673380 1.20E-71 dispersed
Cmu05g1806 Cmu-Chr5:28165876 Cmu08g1619 Cmu-Chr8:27880451 8.10E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6221 PF03791 KNOX2 3.20E-25 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1806 - - - 0.0