Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1809 ATGATGATCGGAGAACAATCTAGATTCAATCACACCATTCAAGTTCCTCCTTGGGACCCACTTGAAGACCACCATCTGACCGGAATTTCCTCGCCAGTCTTCATCGCCGGTGGGGTCGACTCATTTATCGACTCCTTTTCCGCCATTCACCATTACCTTCCCTCTGCGGCGGATTCCGACGATTTGGACGCGGTGGCGGAAGCGGTGGATGGTTTTTCCTGTGACCATTTTCGGATGTTCGAGTTCAAAATCCGGAGATGCGCACGTGGGAGGTCGCACGATTGGACGGAGTGTCCGTACGCACATCCCGGCGAGAAAGCTCGCCGCCGAGATCCGAGGAAGCATCATTACTCCGGTACGGCTTGTCCGGAGTTTCGAAAAGGGAATTGCAAGAAAGGAGATTCTTGCGATCTCGCGCACGGGATTTTTGAGTGTTGGCTTCATCCAGCTCGGTACAGGACTCAACCATGTAAGGATGGATTACCCTGTCGCCGTCGTGTCTGTTTTTTCGCTCACACGCCGGAACAGCTTCGGGTTGTGCCGCAGCAGAGCCCGAGAACGCCTGTTTCGGCCGATTCCGTTGATGGTTCTTCACGAATTGCACACGCACTCGATTCCTATTTTGCTAAAGGGTCATTTGTGACCTCACCCACTTCAATTCTATCAACGCCGCCTGTCTCTCCTCCGTCCGATTCACCACCCCTGTCGCCGAATTGTCCGTTTAATTCGATGAATGGACTGGTTTCATGTATGCGTAATCTTCAAATTGGGAAATTGAAAGCAACCCCTCATTGGGGGAGGATTCAATTGGGGCACAATCCGCTCTCTCCCTCCGGCTCTGGTTTCTTTAACTTACCGTCAACTCCGACCATCGGAAATTACGAATTATGGGGGAAGAATTACGAGGAAGAACCGGTAATGGAGAGAGTGGAATCTGGGAGAGACCTCAGAGCCAAAATGTATGCGAAACTCAGCAAAGACAACTCTGTTAAGGAAGTGGATTCGACATTGACACCCGATGTCGGATGGGTGTCGGAGCTATTAATGTGA 1050 51.24 MMIGEQSRFNHTIQVPPWDPLEDHHLTGISSPVFIAGGVDSFIDSFSAIHHYLPSAADSDDLDAVAEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKHHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLPCRRRVCFFAHTPEQLRVVPQQSPRTPVSADSVDGSSRIAHALDSYFAKGSFVTSPTSILSTPPVSPPSDSPPLSPNCPFNSMNGLVSCMRNLQIGKLKATPHWGRIQLGHNPLSPSGSGFFNLPSTPTIGNYELWGKNYEEEPVMERVESGRDLRAKMYAKLSKDNSVKEVDSTLTPDVGWVSELLM 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28221820 28222869 + CmPI595203_05g018090.1 Cmu05g1809 416723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1809 349 Gene3D - 111 185 - -
Cmu05g1809 349 FunFam Zinc finger CCCH domain-containing protein 66 74 142 - -
Cmu05g1809 349 PANTHER UNKEMPT FAMILY MEMBER 42 348 IPR045234 -
Cmu05g1809 349 ProSiteProfiles Zinc finger C3H1-type profile. 117 143 IPR000571 GO:0046872(InterPro)
Cmu05g1809 349 SMART c3hfinal6 116 142 IPR000571 GO:0046872(InterPro)
Cmu05g1809 349 SMART c3hfinal6 151 174 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1809 Cmu-Chr5:28221820 Cmu11g0187 Cmu-Chr11:2306146 6.20E-86 dispersed
Cmu07g0298 Cmu-Chr7:2964354 Cmu05g1809 Cmu-Chr5:28221820 1.00E-57 transposed
Cmu03g2183 Cmu-Chr3:30337099 Cmu05g1809 Cmu-Chr5:28221820 9.80E-93 wgd
Cmu05g1809 Cmu-Chr5:28221820 Cmu08g1620 Cmu-Chr8:27903551 1.40E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6222 None None None None Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1809 - - - 0.0