Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1814 ATGGTGACGTGGGATGAGATGGGATCCATTGTAGTGGGAAGGTGGGACCCGGAACCCCATCCCAATAGTTTGGTGGAATTTTTCAATATTTTGACTGGGGTCCACGTCACCTCCAATTTCAAAGATTCTTTTTCAGAAACTCATCATCACCATTCATCGACGGCTCTCCTTTATCCAAAGAGGTGGCCGATTCGCCATGAAACTAACAAAGTTGGGAGTGTTTTAGAAGAAGATTATTGTAAAAAGTCTTATTGTGTGTGTGGGATTCAGAAACTGGAATCCATTTGTTCCAAGCAAGGGAGGAAAGGAGTCAACCAAGATGCTGCCTTTTCCTATCAAGAGTATGGAGAAGCAGCGGAGAGTTGTTTGTTTGGAGTTTTTGATGGGCATGGACAAAATGGTCATTTTGTGAGCAATATAGTGAAGAATAGATTACCTTCACTGTTGCTTGGGCAGATAACTGGGGAGACAAAGAGTTTTGAATTGTGGAAACAAGCTTTTGAAACTTCCTTCAAGGCCATGGATAAGGAAATCAAAGTTGAAGAAAATTTGGATTGCTCCTATAGCGGATCCACCGCAGTTGTGGTGGTCAAGCAGGGAGATTATTTGGTAATTGGGAATTTGGGGGATTCGAGGGCGGTGATGGGGAGGATCACAGATGATGGAGGAATCAAAGCCATTCAATTAACCACTGATTTGAAGCCTGGATTACCGAGTGAGGGTGAGCGAATAAGGAGGTGCAAAGGGAGGGTGCTGGCGCTGAAAGAAGAGGCGCATATACCCAGAGTGTGGCTGCCCAATGAAGACGCCCCGGGGCTGGCTATGTCCAGAGCTTTTGGAGATTTTGCTCTTAAACATTATGGCATTATTGCTCTCCCCCTTCTCTCCTTCCGCCCTCTTACTTCTCACGATCGTTTTATTATTCTCGCCACTGATGGGATATGGGACGTGCTGAGCAACAATGAAGTAGCGTCCATCGTGTGGGCTGCGGAGAGCGAAGAAGCGGCGGCGAAAGCGGTGGTGGAGGCGGCGGCCGAGGCTTGGAAACGCTACCCTTCTTCAAAACACGACGACTGCACCGTCTTAGAACCGGCGTTCTCCGTCGTCGGTCAGGCCATGTCCGGGACCGGGAAAGAAGTAATTCAAGGCTGCAGGCTTTTCTAG 1164 47.94 MVTWDEMGSIVVGRWDPEPHPNSLVEFFNILTGVHVTSNFKDSFSETHHHHSSTALLYPKRWPIRHETNKVGSVLEEDYCKKSYCVCGIQKLESICSKQGRKGVNQDAAFSYQEYGEAAESCLFGVFDGHGQNGHFVSNIVKNRLPSLLLGQITGETKSFELWKQAFETSFKAMDKEIKVEENLDCSYSGSTAVVVVKQGDYLVIGNLGDSRAVMGRITDDGGIKAIQLTTDLKPGLPSEGERIRRCKGRVLALKEEAHIPRVWLPNEDAPGLAMSRAFGDFALKHYGIIALPLLSFRPLTSHDRFIILATDGIWDVLSNNEVASIVWAAESEEAAAKAVVEAAAEAWKRYPSSKHDDCTVLEPAFSVVGQAMSGTGKEVIQGCRLF 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28273839 28277382 - CmPI595203_05g018140.1 Cmu05g1814 416728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1814 387 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169(InterPro)
Cmu05g1814 387 Gene3D - 91 366 IPR036457 -
Cmu05g1814 387 SMART PP2C_4 76 369 IPR001932 -
Cmu05g1814 387 ProSiteProfiles PPM-type phosphatase domain profile. 92 366 IPR001932 -
Cmu05g1814 387 PANTHER PROTEIN PHOSPHATASE 94 361 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cmu05g1814 387 Pfam Protein phosphatase 2C 96 345 IPR001932 -
Cmu05g1814 387 CDD PP2Cc 94 328 IPR001932 -
Cmu05g1814 387 SUPERFAMILY PP2C-like 93 362 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1814 Cmu-Chr5:28273839 Cmu10g1190 Cmu-Chr10:4637610 1.50E-72 dispersed
Cmu05g1814 Cmu-Chr5:28273839 Cmu02g1730 Cmu-Chr2:31174190 2.30E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1814 - - - 0.0