Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1823 ATGTCGAAAATGAAACATCTTCTTCGAAAGCTTCACATCGGTGGCGGAATTAATGAACACCAGCGATTGAGCGATGCCCGACCTGTTACACGACCCAGTTCGAGCCCCAGTCCAGGCCCAAGCCCCAATAGTAATCCATCTGGTTCGTCGTCTTCTGGGTCTTCCTCGTCTTTGTCTATGGCGTCTTCCACTACAATGGGGAGATTGGAGGCTGTTGAATCCGTCGTTGATCCGGCGGCTCCTGGGGATGTCGTGGGCGGTGGGTGCGTGGATTTCAATGCCTTGGAAGAGGAGTTTCAGGTGCAATTGGCTATGGCGATTAGTGCTTCCGATCCTGATTCCAGACAAGACACTGAATCCGCTCAGATCGATGCTGCTAAGCGGATGAGTCTTGGCTGTTCGCCTACAGTCTCCGGCAGTAAAGCCCTCGCTGAATTTCTCTCCCTTCAGTATTGGAGCTATAATGTTGTAAATTATGATGAAAAAGTGATGGATGGATTTTATGACTTATATGGCATTACTGCAAACTCTAGCACTCGAGGAAAGATGCCACTGTTAGTTGATCTTAAAGAAATATGTGTGACAAGTGATATTGATTATGAAGTGATTTTGGTTAACCGCTTGCTTGATCCTGAGCTTCAACAGTTGGAGAGACAAGCATATAACATATTCATGGAATGCAGAGTTTCTGAATATGGCTTCATTTTAAGTGGTCTGGTTCAAAAAATTGCTGATATCGTTGTTGCTAGAATGGGTGGTCCTGTTGGTGATGCTGAAGAAATGTTGAGAAGGTGGACCCGCAGGAGTTATGAGATGCGTAGTTCCCTGAACACTATTATTCTACCACTTGGACGTCTAGATATTGGACTTGCACGTCATAGAGCCTTGCTTTTTAAGGTACTAGCTGATAGGATTAATCTTCCATGCATACTTGTCAAAGGAAGCTACTACACTGGTACAGATGACGGAGCTGTGAACATGATCAAAATTGATAATGGAAGTGAATATATTATTGATCTTATGGGTGCTCCAGGCACGCTAATTCCCTCAGAGGCACCCAGCTGTCAATTTTCGAATTATGGCTTTGATAGGAGGCCCGCAGATGTTATAGAAGTTCCTGAAGATACACCAGTATTACAAAATGAAGAAGCTGAATCAGTATCAATTTCATCTACTCAAGATGGAGTAGCAAATGTTTGCAACTTAATATCCAAAGAAGCTTCAGATTTAGATGCTCAATCAAAAGAAAACGTTAGGAACTTTATTGAAGAAATTCAAACTGGGAGTCCTGATTATGATTTTACGAAGCTTCAAGAATCAGAAAACAGTGTGTATGATAGTTCATTGGGTGCATGTGCACAGTCCGCATCTGCACAGAAGAAGAAAGTGAAAAAAGTGTCAAAGTATGTCATAAGTGCTGCAAAAAACCCAGAGTTTGCTCAGAAATTACATGCTGTCTTGTTAGAGAGTGGTGCATCACCTCCTGCAGATTTGTTTTCAGATATAGACTCACAGGATAATGGTGAAAGCAAAGCGACTTTTCAAATGTATCCAATCAACGGAAAGGGCATTGATGTTGGTCTCCATAGCCACCCCTATAGTTTAGCAAACCATGGACAGTCTTCTGCTACTTCTACCGAAACAGAGTATTTAAACAATGCTGTCCGTGAAAATAAGCAGAAAGTGTCTGCCGAGGGATCATCTGAAGAACAAATGCCTGATATAAATGCAAACAAGCACAGTATTTTTTGGCCTCACAGTATGAAAAACGAGGGCTTTGTGTTTGTTGATTCTAATGGGGAAACCGGAAAATTGGTCGATGTTAATGGAACTTTTCATCGTGAACATGTGGATGGTGTTTCATTGACATCTGATGCCGACTCTCATAAAAGACTAGGAACTGCCTTAGTGAGTGAAGAAAGAAGATTGTTACAAGATACTAGTGGTGGAAATCTTCAGTGCTTTGATTTGCGTGAAAATCCGCATGAAAATTTGTTAGAAATTGATAATAGTAAACTGCATGCAAGTGATGACCACAGTGAGACAATTAACCCAATATTAGGTGAAGTTGCAGAATGGGAAATTCCTTGGGAGGATCTCCACATTGGTGAACGTATTGGTATTGGGTCATATGGTGAGGTTTATCGAGCAGACTGGAATGGCACTGAAGTTGCTGTGAAGAAGTTCTTGGATCAAGATTTTTCCGGTGCTGCTTTGGTTCAATTAAAATGTGAAGTTGAAATCATGTTAAGGCTGAGGCATCCTAATGTTGTTCTTTTTATGGGAGCGGTCACTCGCCCTCCTCATTTCTCTATCCTTACCGAGTTTCTTCCCAGGGGAAGTTTGTATAGGTTACTGCATCGTCCCAACTCTCAACTAGATGAAAGGAGACGCTTGAAAATGGCTCTTGATGTGGCCAAAGGAATGAACTACTTGCACACAAGTCATCCGACCATAGTTCATAGAGATCTGAAGTCTCCCAATCTCCTTGTTGATAAAAACTGGGTTGTCAAGGTTTGTGATTTTGGTTTGTCACGTGTCAAGCAGAATACATTTCTGTCTTCGAAGTCAACTGCTGGAACGCCTGAATGGATGGCACCAGAAGTTCTAAGGAACGAACCGGCCAATGAAAAGTGTGATGTGTATAGTTTTGGTGTGATATTGTGGGAGTTAACGACTTGCCGGATACCATGGAAAGGTTTGAATCCAATGCAGGTTGTAGGAGCTGTTGGATTCCAGAATAGGCGCCTGGAGATTCCAGAAGATGTTGATCCAGCAGTTGCACAGATCATTTGCGATTGTTGGCAAACGGACTCGCAATTGAGGCCGTCATTCTCTCAGCTTATTACTCGATTGCGGCGCCTTCAACGGCTTGTTCGGAAAACATGCTCTGTGAATCAAATATCGGAGTGA 2913 42.67 MSKMKHLLRKLHIGGGINEHQRLSDARPVTRPSSSPSPGPSPNSNPSGSSSSGSSSSLSMASSTTMGRLEAVESVVDPAAPGDVVGGGCVDFNALEEEFQVQLAMAISASDPDSRQDTESAQIDAAKRMSLGCSPTVSGSKALAEFLSLQYWSYNVVNYDEKVMDGFYDLYGITANSSTRGKMPLLVDLKEICVTSDIDYEVILVNRLLDPELQQLERQAYNIFMECRVSEYGFILSGLVQKIADIVVARMGGPVGDAEEMLRRWTRRSYEMRSSLNTIILPLGRLDIGLARHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNMIKIDNGSEYIIDLMGAPGTLIPSEAPSCQFSNYGFDRRPADVIEVPEDTPVLQNEEAESVSISSTQDGVANVCNLISKEASDLDAQSKENVRNFIEEIQTGSPDYDFTKLQESENSVYDSSLGACAQSASAQKKKVKKVSKYVISAAKNPEFAQKLHAVLLESGASPPADLFSDIDSQDNGESKATFQMYPINGKGIDVGLHSHPYSLANHGQSSATSTETEYLNNAVRENKQKVSAEGSSEEQMPDINANKHSIFWPHSMKNEGFVFVDSNGETGKLVDVNGTFHREHVDGVSLTSDADSHKRLGTALVSEERRLLQDTSGGNLQCFDLRENPHENLLEIDNSKLHASDDHSETINPILGEVAEWEIPWEDLHIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDFSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRGSLYRLLHRPNSQLDERRRLKMALDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTCRIPWKGLNPMQVVGAVGFQNRRLEIPEDVDPAVAQIICDCWQTDSQLRPSFSQLITRLRRLQRLVRKTCSVNQISE 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28327169 28335832 - CmPI595203_05g018230.1 Cmu05g1823 416737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1823 970 SMART serkin_6 700 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1823 970 SUPERFAMILY Protein kinase-like (PK-like) 677 950 IPR011009 -
Cmu05g1823 970 ProSitePatterns Protein kinases ATP-binding region signature. 706 728 IPR017441 GO:0005524(InterPro)
Cmu05g1823 970 MobiDBLite consensus disorder prediction 13 64 - -
Cmu05g1823 970 CDD STKc_MAP3K-like 706 949 - -
Cmu05g1823 970 PANTHER SERINE-THREONINE PROTEIN KINASE 38 955 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cmu05g1823 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1823 970 Pfam Ethylene-responsive protein kinase Le-CTR1 144 348 - -
Cmu05g1823 970 Gene3D Phosphorylase Kinase; domain 1 693 777 - -
Cmu05g1823 970 FunFam Serine/threonine-protein kinase isoform 1 691 778 - -
Cmu05g1823 970 Gene3D Transferase(Phosphotransferase) domain 1 779 965 - -
Cmu05g1823 970 PRINTS Tyrosine kinase catalytic domain signature 813 831 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1823 970 PRINTS Tyrosine kinase catalytic domain signature 774 787 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1823 970 PRINTS Tyrosine kinase catalytic domain signature 879 901 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1823 970 PRINTS Tyrosine kinase catalytic domain signature 923 945 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1823 970 PRINTS Tyrosine kinase catalytic domain signature 860 870 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1823 970 FunFam Serine/threonine-protein kinase CTR1 779 962 - -
Cmu05g1823 970 Pfam Protein tyrosine and serine/threonine kinase 700 952 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1823 970 MobiDBLite consensus disorder prediction 44 64 - -
Cmu05g1823 970 ProSiteProfiles Protein kinase domain profile. 700 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1770 Cmu-Chr2:31588829 Cmu05g1823 Cmu-Chr5:28327169 6.80E-73 dispersed
Cmu03g2221 Cmu-Chr3:30804795 Cmu05g1823 Cmu-Chr5:28327169 8.40E-192 dispersed
Cmu04g1106 Cmu-Chr4:25662839 Cmu05g1823 Cmu-Chr5:28327169 3.40E-178 dispersed
Cmu05g1823 Cmu-Chr5:28327169 Cmu11g1465 Cmu-Chr11:26872969 3.90E-114 dispersed
Cmu10g1271 Cmu-Chr10:5626310 Cmu05g1823 Cmu-Chr5:28327169 1.10E-22 dispersed
Cmu05g1823 Cmu-Chr5:28327169 Cmu10g2661 Cmu-Chr10:33407916 1.90E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75554 PF07714 PK_Tyr_Ser-Thr 3.80E-65 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1823 K04424 - csv:101214554 1713.35