Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1833 ATGATGATGATGATGAAAGGAAATTTAATGGTGGATGAGAATTTGTCAGTTTTGACTTGTGCTTCTGGAGAAATAACAACAAGAAATGAAATTACCCCTACTGGCCCTATCTATTCTCATCAATCCTCTGCTTCCACAAATCAACCGCTGCCACCACCGCCACTACCACTACCACTACCCCCGCCACCGTCCAAGAAGAAGCGAAATCTTCCCGGCAACCCAGACCCAGAAGCGGAAGTGATTGCCTTATCACCAAAATCACTTCTAGCAACGAATAGATTCATATGTGAGATTTGTAAGAAGGGGTTTCAAAGAGATCAGAATCTACAGCTCCACAGAAGAGGACACAATCTACCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAAGCGACATGCGTGCATCATCACCCGTCGAGAGCTCTCGGTGATCTAACCGGGATCAAGAAGCACTTCTGTAGAAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAATGTTCAAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAGAGAGTATAGATGTGACTGCGGAACCCTATTCTCTAGGAGGGACAGTTTCATAACCCACAGAGCATTCTGCAATGCCTTGGCTCAGGAAAGTACCAATTTTAATAATAACAATAATAACCCAACTCCAAAAACATCCCTTTTCCCATCTATTTCCCCTCATAATTTTCCTCTTAAAATCGAACATCAAGACCCTTTTTTTCCTTCCTTAAATCCTCAAAACCCTAACAACCCTACTTCTATCGGGTTCGGTTTACCGGGTCCGGGTCCGGGTCAACTTTTTGCTTCTTGTCCTGCATGGGAAATAAATGATAATAATAATAATAATAATTCATGTCCAGCTGAAATTGCTCCATTTTTACATCACGTGATGGGTTTTGAAGAGGCGTCCTTTGAAGAAGCTCTCAATGGGATATTGATGAATAATAATAATAGAGCTCATAAAGACGGTGGCAAAGGTGGCGCCGCCGCAGCCGGAGACATAACGAGGGATTTTCTTGGGCTGAGACCGGTGGCGGGTACACAGCCGGATCATCCTATGTTTCAGAATCATGAGATGATAAACAACGACATGTCGAATTTGGATTCTTCTTCTTCGACAACATTTGGATTGCACCAGAACCAGAACCAGAACACGACATGTTGGCGTTCATAA 1236 43.45 MMMMMKGNLMVDENLSVLTCASGEITTRNEITPTGPIYSHQSSASTNQPLPPPPLPLPLPPPPSKKKRNLPGNPDPEAEVIALSPKSLLATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPEATCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCNALAQESTNFNNNNNNPTPKTSLFPSISPHNFPLKIEHQDPFFPSLNPQNPNNPTSIGFGLPGPGPGQLFASCPAWEINDNNNNNNSCPAEIAPFLHHVMGFEEASFEEALNGILMNNNNRAHKDGGKGGAAAAGDITRDFLGLRPVAGTQPDHPMFQNHEMINNDMSNLDSSSSTTFGLHQNQNQNTTCWRS 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28402948 28404798 - CmPI595203_05g018330.1 Cmu05g1833 416747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1833 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 116 IPR013087 -
Cmu05g1833 411 MobiDBLite consensus disorder prediction 388 411 - -
Cmu05g1833 411 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 48 371 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cmu05g1833 411 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 169 193 - -
Cmu05g1833 411 SUPERFAMILY beta-beta-alpha zinc fingers 93 190 IPR036236 -
Cmu05g1833 411 Gene3D Classic Zinc Finger 163 232 - -
Cmu05g1833 411 MobiDBLite consensus disorder prediction 47 69 - -
Cmu05g1833 411 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 131 165 - -
Cmu05g1833 411 FunFam protein indeterminate-domain 5, chloroplastic-like 148 227 - -
Cmu05g1833 411 FunFam protein indeterminate-domain 12-like 73 141 - -
Cmu05g1833 411 Gene3D Classic Zinc Finger 90 117 - -
Cmu05g1833 411 SMART c2h2final6 170 190 IPR013087 -
Cmu05g1833 411 SMART c2h2final6 94 116 IPR013087 -
Cmu05g1833 411 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Cmu05g1833 411 MobiDBLite consensus disorder prediction 29 78 - -
Cmu05g1833 411 MobiDBLite consensus disorder prediction 29 46 - -
Cmu05g1833 411 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 196 235 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1833 Cmu-Chr5:28402948 Cmu09g0705 Cmu-Chr9:6571100 1.10E-84 dispersed
Cmu02g0236 Cmu-Chr2:2245428 Cmu05g1833 Cmu-Chr5:28402948 1.70E-76 transposed
Cmu05g1833 Cmu-Chr5:28402948 Cmu09g0066 Cmu-Chr9:880309 2.70E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6224 None None None None Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1833 K25870 - csv:101215280 620.157