Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu05g1838 | ATGGATGATTTTTTGGCGAGTGTGCCTGTGGGAGTGGGTGCAATATTGTTCACGACTTTGTGCGTCGTGGGAGGTGGGTTGGTTTATTTCTATGGACCGTACTGGGGAGTGAGAAGGGTGCCTGGTCCACCAGCTATCCCGCTGGTCGGACACCTTCCCTTGCTGGCTAAGTACGGTCCAGACGTTTTCTCTGTTCTCGCCTCCCAATATGGTCCTATCTTCAGGTTCCATATGGGTAGGCAGCCATTGATAATTATAGCAGACCCTGAGCTTTGTAAAGAAGTCGGTATCAAGAAATTCAAGGACATCCCAAACAGAAGTGTCCCTTCTCCAATATCAGCTTCCCCGCTTCATCAGAAAGGTCTTTTCTTCACAAGGGATGCAAGATGGTCGACAATGCGAAACACCATACTATCGGTCTATCAGCCCTCTCATCTAACGAGCCTAGTACCTACTATGCAATCAATCATTGAAACTGCAACTCAAAATCTCCATTCCTCTGTCGAGGAAGATATCTCTTTCTCCAATCTCTCCCTCAAATTGACCACTGATGTGATCGGAACAGCAGCCTTTGGTGTCAACTTTGGGCTCTCTAATCCACAAGCAACCAAAACCTGTGGTACCAATGGCAATGACAGCAAAAATGAAGTTTCGGACTTCATCAATCAACATATCTACTCTACAACGCAGCTCAAGATGGATTTGTCGGGTTCCTTCTCAATCATTTTGGGACTACTTATCCCTATACTCCAAGAACCATTTAGACAAGTCCTGAAGAGAATACCATTCACCATGGACTGGAAAGTTGACCGGACAAATCAGAAGTTGAGTGGTCGGCTTAATGAGATTGTTGAAAAGAGAATGAAGTGTAACGATCGAGGTTCAAAAGACTTCTTATCACTCATTTTGAGAGCAAGAGAATCAGAGACGGTGTCACGGAATGTATTTACTCCAGACTACATCAGTGCAGTGACGTACGAACACCTACTTGCTGGATCAGCTACTTCAGCATTCACGCTGTCTTCTGTTGTATACTTAGTTGCTGGACATCCAGAAGTCGAGAAGAAGTTGCTTGAAGAGATTGACAACTTTGGTCCATCAGATCAGATACCAACAGCTAATGATCTTCAGCAGAAGTTTCCATATCTTGATCAGGTGATTAAAGAGGCTATGAGATTCTACACTGTTTCCCCTCTAGTAGCTAGGGAGACATCTAAAGATGTAGAGATTGGTGGATATCTTCTTCCAAAGGGGACATGGGTTTGGTTAGCACTTGGAGTTCTTGCCAAGGATCCAAAGAACTTTCCAGAACCAGATAAATTTAAGCCAGAGAGGTTTGATCCGAATGAGGAAGAGGAGAAACAAAGGCATCCCTATGCTTTAATCCCATTTGGAATTGGTCCTCGAGCATGCATTGGTCAAAAATTCGCCCTTCAGGAATTGAAGCTCTCTCTGATCCATTTGTATAGGAAGTTTGTATTTCGGCATTCCCTCTCCATGGAACAACCTCTTGAACTTGAGTATGGTGTCATTCTCAACTTCAAGAATGGTGTCAAGCTCAGAGTGATAAACCGTAAATGA | 1581 | 44.09 | MDDFLASVPVGVGAILFTTLCVVGGGLVYFYGPYWGVRRVPGPPAIPLVGHLPLLAKYGPDVFSVLASQYGPIFRFHMGRQPLIIIADPELCKEVGIKKFKDIPNRSVPSPISASPLHQKGLFFTRDARWSTMRNTILSVYQPSHLTSLVPTMQSIIETATQNLHSSVEEDISFSNLSLKLTTDVIGTAAFGVNFGLSNPQATKTCGTNGNDSKNEVSDFINQHIYSTTQLKMDLSGSFSIILGLLIPILQEPFRQVLKRIPFTMDWKVDRTNQKLSGRLNEIVEKRMKCNDRGSKDFLSLILRARESETVSRNVFTPDYISAVTYEHLLAGSATSAFTLSSVVYLVAGHPEVEKKLLEEIDNFGPSDQIPTANDLQQKFPYLDQVIKEAMRFYTVSPLVARETSKDVEIGGYLLPKGTWVWLALGVLAKDPKNFPEPDKFKPERFDPNEEEEKQRHPYALIPFGIGPRACIGQKFALQELKLSLIHLYRKFVFRHSLSMEQPLELEYGVILNFKNGVKLRVINRK | 526 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 28441824 | 28444168 | + | CmPI595203_05g018380.1 | Cmu05g1838 | 416752 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu05g1838 | 526 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 464 | 473 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cmu05g1838 | 526 | SUPERFAMILY | Cytochrome P450 | 33 | 525 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cmu05g1838 | 526 | PANTHER | THROMBOXANE-A SYNTHASE | 19 | 525 | - | - | |
| Cmu05g1838 | 526 | Pfam | Cytochrome P450 | 41 | 506 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cmu05g1838 | 526 | Gene3D | Cytochrome P450 | 31 | 526 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cmu05g1838 | 526 | FunFam | Cytochrome P450 3A4 | 28 | 526 | - | - | |
| Cmu05g1838 | 526 | PRINTS | E-class P450 group I signature | 67 | 86 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cmu05g1838 | 526 | PRINTS | E-class P450 group I signature | 424 | 448 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cmu05g1838 | 526 | PRINTS | E-class P450 group I signature | 471 | 494 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cmu05g1838 | 526 | PRINTS | E-class P450 group I signature | 320 | 337 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cmu05g1838 | 526 | PRINTS | E-class P450 group I signature | 340 | 366 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cmu05g1838 | 526 | PRINTS | E-class P450 group I signature | 384 | 402 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cmu05g1838 | 526 | PRINTS | E-class P450 group I signature | 181 | 199 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cmu05g1838 | 526 | PRINTS | E-class P450 group I signature | 461 | 471 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cmu05g1838 | 526 | PRINTS | P450 superfamily signature | 385 | 396 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cmu05g1838 | 526 | PRINTS | P450 superfamily signature | 331 | 348 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cmu05g1838 | 526 | PRINTS | P450 superfamily signature | 471 | 482 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cmu05g1838 | 526 | PRINTS | P450 superfamily signature | 462 | 471 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu05g1838 | Cmu-Chr5:28441824 | Cmu01g1854 | Cmu-Chr1:32134121 | 4.00E-28 | dispersed | |
| Cmu05g1838 | Cmu-Chr5:28441824 | Cmu11g0268 | Cmu-Chr11:3230001 | 4.10E-25 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu05g1838 | K20771 | - | csv:101209772 | 991.104 |