Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1839 ATGGGGGGTTCTGGGAAATGGATGAAGGTTTTTATAGGACAGAGGAAGTCTGAGAAGGAAGACAATGAGAAGTTGGGTAGTACTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCATCAGGGGATTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGGACACAAAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCGGCCGATTCTTTTACTGCCGCTGTCGCCACTGTCCTCCGTGCTCCGCCGAAGAATTTCAGGGCTGTCCGCCAAGAATGGGCTGCAATTAGAATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTGTTACACTGAGATGCATGCAGGCTCTGGTTCGAGTTCAAGCTCGAGTCAGGGCACGTCGTGTGAGAATGTCGGTCGAGGGGCAGGCCGTGCAGCAATTGCTTAATGAACATCGCAGCAAAGCTGATCTCTTGAAGCAAGCTGAGGAAGGATGGTGTGATAGCAAAGGGACATTGGAAGATATCAAATCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAGAAGCAATTGAAGGCAACGCCAAACTCAACTTCGCGAACAAATGCTTCGATTTACGCTCTTAAGAATTATGAGTTTGACAAGAACAATTCGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCAAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACTGAATCATTTGAGGTCACTCCGCCTTCAAAGAGCTGTGTAGAGTCTGTTGTGTCTAAACATTCCAAAAGTTCTGAACCAAGCTTGGTGAAAGTTAGGAAGAACAATGTATCAACTAGGATTTCTGCTAAACCTCCCTCAAGTGGGCAAACTCGTTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAAAGCTCTGCTTCATCTTCAATCTGCACGTCCACAACTCCCGTGTCGGGGCATGCTTTCTCAACCATTGAAAGAACAGAGAATGGCAGTTACAGTAGGCCTAGTTACATGAACCTTACAGAGTCGACAAAAGCGAAGCAGAAAACAAATAGTCACTTATCGCACCGAGTTCAAAGGCAGTCGATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAACGGGGATTCTAAGAGCAGTGCCGGATCTGATTCATCAGTCAATCCCTTTAAGCCATTGATGCTGCCAACACGATTGGATAAGAATGGAACAAAGCTAAGGTCATGA 1338 47.01 MGGSGKWMKVFIGQRKSEKEDNEKLGSTKTKKWRLWRSPSGDLSSAWKGYKGGHKAASEGSDSPRAADSFTAAVATVLRAPPKNFRAVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKADLLKQAEEGWCDSKGTLEDIKSKLQMRQDGAFKRERAIAYSLVQKQLKATPNSTSRTNASIYALKNYEFDKNNSGWSWLERWMAAKPWETRLMEQSRTESFEVTPPSKSCVESVVSKHSKSSEPSLVKVRKNNVSTRISAKPPSSGQTRSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTENGSYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNGDSKSSAGSDSSVNPFKPLMLPTRLDKNGTKLRS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28444706 28446514 - CmPI595203_05g018390.1 Cmu05g1839 416753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1839 445 MobiDBLite consensus disorder prediction 307 326 - -
Cmu05g1839 445 MobiDBLite consensus disorder prediction 12 30 - -
Cmu05g1839 445 ProSiteProfiles IQ motif profile. 90 118 - -
Cmu05g1839 445 MobiDBLite consensus disorder prediction 1 31 - -
Cmu05g1839 445 FunFam IQ-domain 11 89 140 - -
Cmu05g1839 445 ProSiteProfiles IQ motif profile. 114 141 - -
Cmu05g1839 445 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515(InterPro)
Cmu05g1839 445 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515(InterPro)
Cmu05g1839 445 PANTHER IQ-DOMAIN 5-RELATED 6 398 - -
Cmu05g1839 445 SMART iq_5 112 133 IPR000048 GO:0005515(InterPro)
Cmu05g1839 445 SMART iq_5 89 111 IPR000048 GO:0005515(InterPro)
Cmu05g1839 445 MobiDBLite consensus disorder prediction 410 424 - -
Cmu05g1839 445 MobiDBLite consensus disorder prediction 410 445 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1839 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1839 Cmu-Chr5:28444706 Cmu09g1952 Cmu-Chr9:35600847 2.20E-27 dispersed
Cmu03g1772 Cmu-Chr3:23563207 Cmu05g1839 Cmu-Chr5:28444706 2.80E-39 transposed
Cmu05g1839 Cmu-Chr5:28444706 Cmu09g0071 Cmu-Chr9:913359 2.60E-60 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu09g1952 . 129 607 IQD Protein Family AT3G52290 54.2 2.4e-103 372.9
Cmu05g2144 . 1766 1975 IQD Protein Family AT2G26410 51.2 2.0e-43 174.1
Cmu03g1772 . 36 443 IQD Protein Family AT3G22190 57.8 9.5e-97 350.9
Cmu05g1839 . 1 438 IQD Protein Family AT2G26180 61.6 3.9e-119 425.2
Cmu01g2294 . 25 298 IQD Protein Family AT2G33990 52.1 7.3e-63 237.7
Cmu07g0985 . 109 292 IQD Protein Family AT2G33990 54.0 1.7e-48 189.9
Cmu01g2294 . 25 246 IQD Protein Family AT3G15050 50.9 1.5e-55 213.4
Cmu07g0985 . 112 285 IQD Protein Family AT3G15050 62.1 3.6e-54 208.8
Cmu01g0729 . 119 471 IQD Protein Family AT5G13460 50.4 8.2e-75 278.1
Cmu06g0268 . 1 509 IQD Protein Family AT4G00820 51.4 7.5e-115 411.4
Cmu06g0268 . 1 509 IQD Protein Family AT1G01110 50.1 2.5e-110 396.4
Cmu09g0023 . 1 399 IQD Protein Family AT3G16490 50.5 1.2e-66 250.8
Cmu03g2201 . 1 391 IQD Protein Family AT3G16490 50.2 5.2e-65 245.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39