Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1848 ATGCATGCATTAGTTGATGACGGGTGGAAAGTGGAGAAGAGAGTTGCACAGTTGAGTTGCATGTGCTGCGACGCAGGAGAGACAACCCGGTCTAAGCGGCTTAAGAAAGAAAGTCCGAGTGGGATTGAATGTGTATCCACGCTCGAAGCAGCAGATAAGAAAAAGGGGCTAAGCCGGAGAACTTTTGAGAATGGGTTTTATGCTCTCACTGAGGTTTCTCTTCAAGTTCTTCTACCTGTTGCTATAGATTACAGCTTCCGATTGAGGAGCTTCGTCGGAGTCGGCGGCGTTGATTCGGATCGGGAGGAGGAAGAGAAGGCAGAAGAAGAGGTGCAAGGTTCCAGCCTGACGATGGAAAAAGTGGCGGCGGCTAAGAAGTTTATAGAGAACCATTACAGAGCTCAGATGAAGAACATTCAAGAACGGAAGGAGAGACGGTGGATGTTGGAAAGAAAGTTAGCCTCATCGGATGTGCCTAAGGAAGAACAAATCAATCTTATCAAAGATTTAGAGCGGAAAGAAACTGAGTTTATGCGACTCAAAAGGCACAAGATTTGTGTTGATGATTTTGAGCTTTTAACCATCATTGGCAGGGGGGCTTTTGGTGAGGTTCGATTATGTCGTGAAAAGAAATCTGGTGATATATATGCAATGAAAAAGTTGAAAAAATCTGAAATGCTGATGAGGGGACAGGTGGAACATGTTAGAGCAGAAAGGAATTTATTAGCAGAAGTTGCCAGCCACTGCATAGTGAAGCTTTATTACTCATTCCAGGATGCTGAATACTTGTATTTGATCATGGAATATCTACCAGGTGGAGATATGATGACTCTGCTTATGAGAGAAGACACATTGACTGAAAATGTAGCTAAATTTTACATTGCACAGAGTGTTCTAGCAATAGAATCTATCCACAGGCACAGCTATATTCACAGGGATATTAAACCTGACAATCTTCTTCTGGACAAAAATGGTCACATGAAACTTTCTGATTTTGGTCTCTGTAAGCCATTGGATTCTTTAACCCTATCAGCACTACATGAAAATAAAGCCATGGATGATGAAAATCTGGCAGAACCAATGGATATAGATGATAATAGGAGCAGTTGGAAGAGTCCCAGTGAACAGCTACACCATTGGCAAATGAACCGGAGGAAATTGGCATTTTCAACTGTTGGAACACCAGATTATATAGCTCCAGAAGTATTGCTTAAAAAAGGATATGGAATGGAGTGTGACTGGTGGTCCCTCGGTGCAATTATGTATGAGATGCTTGTAGGTTACCCTCCATTTTACTCCGATGATCCAATCACCACCTGCAGAAAGATTGTTCATTGGAAAAATCACTTGAAGTTTCCAGAAGATGCTAAGTTAACAATTGAAGCAAAGGATCTCATTTGTAGGTTGCTGTGCGATGTTGAGCATAGACTTGGTACTGGAGGAGCATACCAAATTAAAGCCCATCCTTGGTTCAAAGATGTCGTCTGGGATAGGCTCTATGAAATGGAGGCAGCATTTAAGCCTGAAGTCAATGGAGAGCTCGATACCCAGAACTTTATGAAGTTTGATGAATTGGATCCACCTATACCAGGAAAACGTGGCTCAGGACCGTCAAGGAAGATGCTATTGACTCCCAAAGATCTCAGCTTTGTTGGGTATACATACAAGAACTTCGATGCTGTCAAAGGAGGGCTTCATGGATCACTTGATTCTCAGAGATTGTCAATGAAACAGCCTCCAATGGACGTATTAAATGGCACCGGGGGAGACTACACAACCGAACTAATAGGCAATGAGGCTGAAATGCAGATGTTACAGTTTACAATACAAAATGGATATATAAAGCAAACAACAATGCCTGAAGAGTTTCTAATCATGAGAGACCAGCTAAGTAATCAAGCACTTGGTGAAAAAGTTCTCTTTGGTCAAAGTTCTTTTTTCTCCATTTCCCCTTCTTCATTAATGGCTAATTATCAAGGAACTGGATAG 1989 41.93 MHALVDDGWKVEKRVAQLSCMCCDAGETTRSKRLKKESPSGIECVSTLEAADKKKGLSRRTFENGFYALTEVSLQVLLPVAIDYSFRLRSFVGVGGVDSDREEEEKAEEEVQGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWMLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTENVAKFYIAQSVLAIESIHRHSYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSLTLSALHENKAMDDENLAEPMDIDDNRSSWKSPSEQLHHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWKNHLKFPEDAKLTIEAKDLICRLLCDVEHRLGTGGAYQIKAHPWFKDVVWDRLYEMEAAFKPEVNGELDTQNFMKFDELDPPIPGKRGSGPSRKMLLTPKDLSFVGYTYKNFDAVKGGLHGSLDSQRLSMKQPPMDVLNGTGGDYTTELIGNEAEMQMLQFTIQNGYIKQTTMPEEFLIMRDQLSNQALGEKVLFGQSSFFSISPSSLMANYQGTG 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28534477 28542960 + CmPI595203_05g018480.1 Cmu05g1848 416762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1848 662 FunFam Non-specific serine/threonine protein kinase 510 520 - -
Cmu05g1848 662 SMART serkin_6 190 491 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1848 662 Pfam Protein kinase C terminal domain 510 555 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1848 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1848 662 Pfam Protein kinase domain 191 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1848 662 Pfam Protein kinase domain 382 491 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1848 662 SMART pkinase_C_6 492 557 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1848 662 FunFam Non-specific serine/threonine protein kinase 151 273 - -
Cmu05g1848 662 CDD STKc_NDR_like 188 556 - -
Cmu05g1848 662 CDD MobB_NDR_LATS-like 124 185 - -
Cmu05g1848 662 PANTHER SERINE/THREONINE-PROTEIN KINASE 102 559 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cmu05g1848 662 ProSiteProfiles AGC-kinase C-terminal domain profile. 492 565 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1848 662 ProSiteProfiles Protein kinase domain profile. 190 491 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1848 662 FunFam Non-specific serine/threonine protein kinase 274 341 - -
Cmu05g1848 662 FunFam Non-specific serine/threonine protein kinase 390 509 - -
Cmu05g1848 662 SUPERFAMILY Protein kinase-like (PK-like) 187 537 IPR011009 -
Cmu05g1848 662 Gene3D Transferase(Phosphotransferase) domain 1 276 508 - -
Cmu05g1848 662 Gene3D Phosphorylase Kinase; domain 1 181 275 - -
Cmu05g1848 662 ProSitePatterns Protein kinases ATP-binding region signature. 196 219 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1848 Cmu-Chr5:28534477 Cmu06g0697 Cmu-Chr6:8115155 2.10E-183 dispersed
Cmu01g2485 Cmu-Chr1:36712838 Cmu05g1848 Cmu-Chr5:28534477 5.50E-182 transposed
Cmu04g1323 Cmu-Chr4:27549152 Cmu05g1848 Cmu-Chr5:28534477 6.20E-44 transposed
Cmu08g1531 Cmu-Chr8:27150874 Cmu05g1848 Cmu-Chr5:28534477 1.70E-167 transposed
Cmu03g2134 Cmu-Chr3:29754325 Cmu05g1848 Cmu-Chr5:28534477 1.40E-222 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75555 PF00069 Pkinase 1.10E-42 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1848 K08790 - csv:101212228 1012.68