Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1860 ATGAGGAAAAAGTCCCTTGATTCTGTTGTCTGCCATTTGTCTTTCTTCTTTATACTTCTTTCCTATGCCAGTTTCTGCTTCGCCAATCGCGATATGGAAGCGCTGTTGAAGATGAAGAGCGCCTTGATCGGACCGGGGAGGTCGGGGCTTGGTGATTGGGTGCCGTCGTCGTCCCCGTCTGCTCATTGCCATTTCTCTGGCGTTACGTGCGATGGTGATAGTAGAGTTGTTGCGCTTAACGTCTCGAATCTCCGTCTATTTGGTCCAATTCCGCCGGAAATTGGGATGTTGGAGAAGATTGAGAACTTGACCTTAGTGAGTAATAATCTCACCGGAGGGCTTCCTCTTGAAATGGCGAAACTCACGTCGCTTAAATTTCTTAACCTATCTAACAACGCATTTGGTGTTAATTTAGCGGCGGAAATCACGTTAGGAATGACGGAACTCGAGGTTTTCGATATATATAACAATAATTTCTCTTGTCCACTACCGGTGGAGTTTGTCAAACTGAAGAAGCTTAAGCATCTTGACCTTGGCGGATCCTACTTTAATGGTCAGATTCCTGCTGTTTACTCGGAGATGCAGTCGTTGGAGTTCTTGAGCGTGCGGGGAAATACGCTTTCCGGAAGGATTCCGGCGAGTTTGGCGCGGTTAAAGAATCTTAAATACCTTTACGCCGGATATTTTAATCATTACGATGGCGGAATTCCGGCCGAGTTTGGATCGTTGAGTTCCCTGGAGCTTATCGATTTAGCCAACTGTAACCTCACCGGTGAAATTCCTCCGAGTTTGGGGAATTTGAAGCACCTGCATAGTTTATTTCTTCAAGTAAACAATCTTACCGGTCGGATTCCCCCTGAACTTTCCGGTCTGATTAGCCTCAAGTCATTGGACCTCTCGCTGAACGAACTTACCGGAGAGATACCGTCGAGTTTCGTGGCGCTGCAGAACCTTACGCTGATCAATTTGTTCAGCAACAAACTTCATGGTCCAATTCCTAGTTTCGTCGGTGATTTTCCACATCTCGAAGTGCTTCAGTTGTGGAGTAACAACTTCACGCTCGAACTCCCTGAGAATCTCGGGCGTAACGGAAAGTTGTTTCTGCTCGACGTGGCGACAAATCATTTAACTGGGCTTATTCCTCCGGATTTATGTAACGGTAGGTTGAAGATTTTGATTCTGTTGGATAATTACTTTTTTGGGCCCATCCCTGAGAAATTAGGCCGGTGTGATTCGCTTACGAAAATAAGAATTGCGGGTAATTTCTTCAATGGAACGGTTCCGGCAGGGTTCTTCAACTTTCCGGCGTTGGAGCTACTCGATATCAGTACTAATTACTTTTCCGGCGCCCTTCCATCGCAAATGTCAGGGGAGTTTCTTGGAACTCTGCAGCTGAATAACAACAATATAACCGGGGAAATCCCGGCGGCGATTAAGAATTTAAAAAACTTGCAGGTTGTTTCTCTGGAACATAACCAATTCAACGGGAAATTGCCTGTGGAAATATTTGAATTGAGCAAGTTGCTGAGGATTAACATCAGCTTTAACAATATTAGCGGCGAGATCCCGCATTCGGTCGTTCATTGCACCTCTCTAACGTCAATTGATCTCAGTAAAAATGATCTTGTCGGCACAATTCCAAGAGGAATTTCGAAGCTGAAAATCTTGAGCGTCTTCAATTTGTCAAGAAATCACTTGACGGGCCAAATTCCGAATGAGATTCGGTCGATGATGAGCCTAACAACTCTGGATTTGTCATACAACAATTTTTTCGGTAGAATCCCCACCGGCGGTCAGTTTTCGGTATTCAACGGCAGCGCTTTCGTCGGAAACCCTAACCTCTGCTTCCCCCATGGGCCTTGCGCATCAATGCACAGGAATTTGAGATCTGTTAAACTAATCATCCCAATTGTTGCGATATTCATCGCTCTATTATGCGCACTCGCTGCATTTTATCTACGGAAGAGAAAGAGGATTCAGAAGTCAAAGGCATGGAAACTCACAGCGTTCCAACGCCTGAACTTCAAAGCAGAGGACGTCCTTGAGTGTTTGAAGGAGGATAATATCATCGGCAAAGGCGGTGCCGGGGTCGTCTACCGTGGATCAATGCCAGACGGCTCCGTCGTGGCGATTAAACTATTGTTAGGAAGCGGCCGGAATGACCACGGTTTCTCGGCCGAAATTCAGACTCTAGGGCGAATCAAGCACCGGAATATCGTCAGGCTTTTGGGGTACGTGTCGAACAGGGATACGAATCTGCTGCTGTACGAATACATGCCTAATGGTAGCTTGGACCAGAGGCTGCATGGAGTGAAGGGCGGGCATTTGCACTGGGACTTACGGTACAAGATCGCAATGGAAGCCGCCAAGGGGCTCTGTTACTTGCACCATGATTGTACGCCGCTGATCATTCACAGAGACGTGAAGTCCAATAATATCCTACTCGATAAGCTGTTTGAGGCACATGTTTCTGACTTTGGGCTCGCCAAGTTCTTGCAGAACGGCGGCGCCTCCGAGTGTATGTCCTCCATTGCCGGCTCCTACGGTTACATCGCTCCAGAATACGCCTACACTCTTAAAGTGGACGAGAAAAGCGACGTGTACAGTTTCGGTGTGGTACTGCTGGAGCTTATAGCCGGGAGGAAGCCAGTGGGGGATTTTGGAGAAGGCGTGGACATAGTCAGGTGGGTCCTCAAAACCACATCAGAACTCTCTCAACCGTCGGATGCAGCCTCAGTATTAGCTGTGGTGGACTCGCGCCTCACAGAATACCCTCTCCAAGGTGTAATCCATCTCTTCAAAATAGCCATGATGTGCGTTGAAGAAGACAGCTCTGCAAGGCCAACCATGAGAGAGGTTGTCCACATGCTCTCCAATCCTCCCAGGTCTGCCCCTACTCTCATCAACCTCTAA 2913 47.51 MRKKSLDSVVCHLSFFFILLSYASFCFANRDMEALLKMKSALIGPGRSGLGDWVPSSSPSAHCHFSGVTCDGDSRVVALNVSNLRLFGPIPPEIGMLEKIENLTLVSNNLTGGLPLEMAKLTSLKFLNLSNNAFGVNLAAEITLGMTELEVFDIYNNNFSCPLPVEFVKLKKLKHLDLGGSYFNGQIPAVYSEMQSLEFLSVRGNTLSGRIPASLARLKNLKYLYAGYFNHYDGGIPAEFGSLSSLELIDLANCNLTGEIPPSLGNLKHLHSLFLQVNNLTGRIPPELSGLISLKSLDLSLNELTGEIPSSFVALQNLTLINLFSNKLHGPIPSFVGDFPHLEVLQLWSNNFTLELPENLGRNGKLFLLDVATNHLTGLIPPDLCNGRLKILILLDNYFFGPIPEKLGRCDSLTKIRIAGNFFNGTVPAGFFNFPALELLDISTNYFSGALPSQMSGEFLGTLQLNNNNITGEIPAAIKNLKNLQVVSLEHNQFNGKLPVEIFELSKLLRINISFNNISGEIPHSVVHCTSLTSIDLSKNDLVGTIPRGISKLKILSVFNLSRNHLTGQIPNEIRSMMSLTTLDLSYNNFFGRIPTGGQFSVFNGSAFVGNPNLCFPHGPCASMHRNLRSVKLIIPIVAIFIALLCALAAFYLRKRKRIQKSKAWKLTAFQRLNFKAEDVLECLKEDNIIGKGGAGVVYRGSMPDGSVVAIKLLLGSGRNDHGFSAEIQTLGRIKHRNIVRLLGYVSNRDTNLLLYEYMPNGSLDQRLHGVKGGHLHWDLRYKIAMEAAKGLCYLHHDCTPLIIHRDVKSNNILLDKLFEAHVSDFGLAKFLQNGGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGRKPVGDFGEGVDIVRWVLKTTSELSQPSDAASVLAVVDSRLTEYPLQGVIHLFKIAMMCVEEDSSARPTMREVVHMLSNPPRSAPTLINL 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28624357 28629135 + CmPI595203_05g018600.1 Cmu05g1860 416774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1860 970 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 143 230 - -
Cmu05g1860 970 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 231 335 - -
Cmu05g1860 970 SUPERFAMILY L domain-like 380 623 - -
Cmu05g1860 970 FunFam LRR receptor-like serine/threonine-protein kinase EFR 336 627 - -
Cmu05g1860 970 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 759 968 - -
Cmu05g1860 970 Gene3D Transferase(Phosphotransferase) domain 1 759 964 - -
Cmu05g1860 970 Gene3D Ribonuclease Inhibitor 230 334 IPR032675 -
Cmu05g1860 970 Gene3D Ribonuclease Inhibitor 335 627 IPR032675 -
Cmu05g1860 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g1860 970 Pfam Leucine rich repeat 531 590 IPR001611 GO:0005515(InterPro)
Cmu05g1860 970 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Cmu05g1860 970 Gene3D Ribonuclease Inhibitor 145 229 IPR032675 -
Cmu05g1860 970 SUPERFAMILY Protein kinase-like (PK-like) 675 957 IPR011009 -
Cmu05g1860 970 Pfam Leucine Rich Repeat 245 267 IPR001611 GO:0005515(InterPro)
Cmu05g1860 970 Pfam Leucine Rich Repeat 462 481 IPR001611 GO:0005515(InterPro)
Cmu05g1860 970 Pfam Leucine Rich Repeat 269 291 IPR001611 GO:0005515(InterPro)
Cmu05g1860 970 Pfam Leucine Rich Repeat 293 313 IPR001611 GO:0005515(InterPro)
Cmu05g1860 970 Pfam Leucine Rich Repeat 196 218 IPR001611 GO:0005515(InterPro)
Cmu05g1860 970 Pfam Protein kinase domain 686 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1860 970 SMART serkin_6 684 957 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1860 970 SUPERFAMILY L domain-like 70 399 - -
Cmu05g1860 970 ProSiteProfiles Protein kinase domain profile. 684 967 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g1860 970 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 15 958 IPR050647 -
Cmu05g1860 970 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 653 758 - -
Cmu05g1860 970 SMART LRR_typ_2 243 267 IPR003591 -
Cmu05g1860 970 SMART LRR_typ_2 291 315 IPR003591 -
Cmu05g1860 970 SMART LRR_typ_2 121 145 IPR003591 -
Cmu05g1860 970 SMART LRR_typ_2 481 505 IPR003591 -
Cmu05g1860 970 SMART LRR_typ_2 553 577 IPR003591 -
Cmu05g1860 970 SMART LRR_typ_2 339 363 IPR003591 -
Cmu05g1860 970 Gene3D Ribonuclease Inhibitor 30 144 IPR032675 -
Cmu05g1860 970 Gene3D Phosphorylase Kinase; domain 1 649 758 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1860 Cmu-Chr5:28624357 Cmu10g1617 Cmu-Chr10:14382863 1.70E-08 dispersed
Cmu09g0998 Cmu-Chr9:10061495 Cmu05g1860 Cmu-Chr5:28624357 4.80E-40 dispersed
Cmu05g1860 Cmu-Chr5:28624357 Cmu01g1745 Cmu-Chr1:31153033 2.80E-96 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75556 PF00069 Pkinase 1.70E-42 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1860 - - - 0.0