Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1865 ATGGGTTCAACACAATTTTCATTTCTATTATATCTTCTTACAATCCAAATTTCAGTATCAGGAGTATTTTCCACCACTTTCAGCATAGTAAATAAATGTGATTACACAGTTTGGCCGGGAATTCTCTCAAACGCCGGAGTTCCACCACTTCCCACCACAGGCTTCGTCCTTGCCGCCGGCGAGTCCAAAACAATCTCCGCTCCGGCATCTTGGGGTGGCCGATTCTGGGGCCGAACTCGCTGTTCAGAAGACTCCACCGGAAAATTCTCTTGCCTCACTGGAGATTGCGGCTCCAACAAGGTCGAGTGCAGTGGAAACGGCGCGAAGCCACCGGCAACTCTGGCGGAGTTCACCCTTGACGGTGCCGGCGGGTTGGACTTCTTCGACGTGAGTTTGGTCGACGGTTACAATATCCCTATGCTGGTGGTCCCACAAGGTGGCACCGGCGAGAAATGCGTGAGCACGGGATGCGTTGTGGATTTGAACGGCGCGTGTCCTCAAGAACTCAAGGTTATGAGCGTTGACGGCGGAGATAACGTCGCGTGTAAAAGCGCGTGCGAAGCATTTAACCAACCGCAATTCTGTTGCAGTGGCGAGTACGCGACTCCCGATACTTGTAAACCTTCTGCGTACTCGCAGGTGTTCAAAAACGCGTGCCCACGCGCTTACAGCTACGCTTACGACGACACGACTAGCACGTTTACATGTGCCGACGCTGATTATATTATAACATTCTGCCCTTCACCCAACACTAGTCAGAAATCAACGGACAATCACAACACAAACACGCCGGCGATCAACGGCGGAAACGGTACAATGGTTTACGAAGGGGCTGAGTATGATCTAAGCGGCGCGTCGAGAACAACGCTCCGCCAATTTCTTGGGGTAGTCGTTGCCGCCGTGGCAATTCTTCAAATTCAGCAACTCGTTTGA 933 51.88 MGSTQFSFLLYLLTIQISVSGVFSTTFSIVNKCDYTVWPGILSNAGVPPLPTTGFVLAAGESKTISAPASWGGRFWGRTRCSEDSTGKFSCLTGDCGSNKVECSGNGAKPPATLAEFTLDGAGGLDFFDVSLVDGYNIPMLVVPQGGTGEKCVSTGCVVDLNGACPQELKVMSVDGGDNVACKSACEAFNQPQFCCSGEYATPDTCKPSAYSQVFKNACPRAYSYAYDDTTSTFTCADADYIITFCPSPNTSQKSTDNHNTNTPAINGGNGTMVYEGAEYDLSGASRTTLRQFLGVVVAAVAILQIQQLV 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28654154 28655716 - CmPI595203_05g018650.1 Cmu05g1865 416779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1865 310 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Cmu05g1865 310 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Cmu05g1865 310 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Cmu05g1865 310 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Cmu05g1865 310 PANTHER OS03G0233200 PROTEIN 9 247 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Cmu05g1865 310 SMART tha2 27 247 IPR001938 -
Cmu05g1865 310 CDD TLP-PA 26 246 - -
Cmu05g1865 310 Gene3D Thaumatin 25 247 IPR037176 -
Cmu05g1865 310 PIRSF PR5 1 278 IPR001938 -
Cmu05g1865 310 Pfam Thaumatin family 31 247 IPR001938 -
Cmu05g1865 310 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Cmu05g1865 310 FunFam THAUMATIN-LIKE PROTEIN 1 25 247 - -
Cmu05g1865 310 SUPERFAMILY Osmotin, thaumatin-like protein 25 248 IPR037176 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1865 Cmu-Chr5:28654154 Cmu08g1366 Cmu-Chr8:25862574 7.10E-126 dispersed
Cmu03g1765 Cmu-Chr3:23474689 Cmu05g1865 Cmu-Chr5:28654154 8.60E-52 transposed
Cmu05g2519 Cmu-Chr5:34025117 Cmu05g1865 Cmu-Chr5:28654154 3.90E-76 transposed
Cmu01g1976 Cmu-Chr1:33046859 Cmu05g1865 Cmu-Chr5:28654154 2.40E-76 wgd
Cmu05g1865 Cmu-Chr5:28654154 Cmu08g1365 Cmu-Chr8:25846796 1.40E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1865 - - - 0.0