Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1879 ATGGCACTCCTAACTAATTCCTCTACTGACCACAAGAAACCCCTCCGTAATAAACGCCGGAAAAAACACCCAACCCCAACTCCGCCACCCTCCTCCGCCCAATCCTCATGGGATCATTTCAAGAATCTCATCACCTGCAAACAGGTTGAGGTTTCGAGATCAGTTCAGGAGCCGACGAAACGGTCACCGGCCTACTCCAAATTGGGCTCTTCTTGCAGTTCAATATGTAGCTTTAGAGATGTGGTTCATGGCAATGCTAAAGTGGTTCATAGAGCCGACAACTCACCGGAAAGCAGCTCCGTCGGACAAGAAACCAGGTTGCTTACTAGAAAACCTGCTAACGGCTCTTCCTCTCGTTCTTTAACCGCGCCGCCACCGCCACCACCATCCAGAACTAAAACCGCTGCTTCGGCTTCTGCTTCCTACAATTCCTCGTCTTCTAGAGGATTACAATTACGAAAGCTTTCTGGGTGTTACGAATGCCACACCATCGTTGACCCTAGCAGGTACCCAATTCCAAGGAGTTCTCTATGTCCTTGTCCTCAATGTGGAGAGGTCTTCCCTAAGGCTGAAAGCTTAGAGCTTCACCAATTAGTTCGCCACGCTGTTTCGGAATTGGGTCCTGACGATTCGGGTCGAAACATCGTGGAGATAATTTTCAAATCAAGCTGGCTGAAAAAGGACCGTCCAATTTGCAAGATCGAACGGATATTAAAGGTCCACAATACCCAACGCACCATCCAACGGTTTGAGGATTGCCGTGACGCAGTGAAGACACGTGCGCTCGGAAGCACCAGAAAAAACCCGCGATGTGCGGCTGACGGTAATGAGCTGTTGCGGTTCCATTGTAGCGCCTTGTCGTGTGACCTCGGCTCACGTGGCTCAACCGGCTTGTGCGGCTCGATTCCCGGCTGCGGTGTCTGCAGTGTAATTCGTCATGGATTCCAGTGTAAGCCCGGTGGGCCCCCTGGTGTACGGACCACCGCTAGTAGTGGTAGGGCCCACGATTCGTTTGAATGCGGCGACGGAAGGAGACGTGCGATGTTGGTCTGCCGTGTAATCGCCGGGAGAGTGAAGCGGATCTCGGAGGAGGCTGCGACGGAGGAGGAGAATCTGTCGATGGCGGCAGCCTCATACGACTCCGTTTCACGACACGCCGGGATGTACTCCAATCTCGAGGAGTTGATCATTTTCAATCCAAAGGCTATCCTTCCTTGTTTCGTTGTCATCTACGAAGCGCTCCAAACCTAA 1251 52.2 MALLTNSSTDHKKPLRNKRRKKHPTPTPPPSSAQSSWDHFKNLITCKQVEVSRSVQEPTKRSPAYSKLGSSCSSICSFRDVVHGNAKVVHRADNSPESSSVGQETRLLTRKPANGSSSRSLTAPPPPPPSRTKTAASASASYNSSSSRGLQLRKLSGCYECHTIVDPSRYPIPRSSLCPCPQCGEVFPKAESLELHQLVRHAVSELGPDDSGRNIVEIIFKSSWLKKDRPICKIERILKVHNTQRTIQRFEDCRDAVKTRALGSTRKNPRCAADGNELLRFHCSALSCDLGSRGSTGLCGSIPGCGVCSVIRHGFQCKPGGPPGVRTTASSGRAHDSFECGDGRRRAMLVCRVIAGRVKRISEEAATEEENLSMAAASYDSVSRHAGMYSNLEELIIFNPKAILPCFVVIYEALQT 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28737487 28739779 - CmPI595203_05g018790.1 Cmu05g1879 416793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1879 416 SUPERFAMILY ADP-ribosylation 203 412 - -
Cmu05g1879 416 MobiDBLite consensus disorder prediction 92 120 - -
Cmu05g1879 416 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 206 IPR013087 -
Cmu05g1879 416 MobiDBLite consensus disorder prediction 51 71 - -
Cmu05g1879 416 Gene3D - 202 413 - -
Cmu05g1879 416 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 35 411 - -
Cmu05g1879 416 MobiDBLite consensus disorder prediction 1 39 - -
Cmu05g1879 416 ProSitePatterns Zinc finger C2H2 type domain signature. 178 201 IPR013087 -
Cmu05g1879 416 MobiDBLite consensus disorder prediction 89 144 - -
Cmu05g1879 416 FunFam C2H2-like zinc finger protein 202 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1966 Cmu-Chr2:33469953 Cmu05g1879 Cmu-Chr5:28737487 3.30E-53 dispersed
Cmu03g1530 Cmu-Chr3:12350152 Cmu05g1879 Cmu-Chr5:28737487 4.40E-86 dispersed
Cmu05g1541 Cmu-Chr5:24235898 Cmu05g1879 Cmu-Chr5:28737487 5.80E-49 dispersed
Cmu05g1879 Cmu-Chr5:28737487 Cmu10g1426 Cmu-Chr10:8413230 9.80E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6226 None None None None Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1879 - - - 0.0