Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1893 ATGTCGGCCGGACTCGGAAAATGCAGCAAAATCCGGCACATTGTCAGGCTCCGACAAATGCTCCGACGGTGGCGCAACAAGGCTAGAATGTCCGCTAATCGCATACCTTCCGACGTACCCGCCGGACATGTGGCTGTCTGTGTCGGAACCAGCTGCCGGCGCTTCGTCGTCCGGGCCACTTACTTGAACCACCCGGTTTTCAAGAAGCTTCTGGTTCAAGCCGAAGAGGAGTACGGGTTCACCAATCAAGGCCCTTTGGCAATTCCTTGCGAAGAGTCGGTATTTGAAGAAGTCATCCGGTTCATCTCCAGATCGGAGTCTCCCAACTCGGGTCGGTTCGTGAAATTGGACGATTTTCAAAGTTATTGTCATATCGGAATCAGAACCGGGCTCGATTTATGGCCGGAATCCCGGCCTTTGCTTCATGGGTTGGCCGAGAAATCCATTTGCTCCGGAGAATGCTTATGGAGATGGCAAAACTGGTGGAGGGATCATTTCACCGTGTCGTCCCGAGCCCGAATCGGAGTCGGGGCGAAACCTAGAAGGAAGAAGAACAACAACGACAACAGAGAAAGTGTTGCTAATTTGGCCAGAGGTCTATTTTCTGTAAATTAA 615 51.87 MSAGLGKCSKIRHIVRLRQMLRRWRNKARMSANRIPSDVPAGHVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCEESVFEEVIRFISRSESPNSGRFVKLDDFQSYCHIGIRTGLDLWPESRPLLHGLAEKSICSGECLWRWQNWWRDHFTVSSRARIGVGAKPRRKKNNNDNRESVANLARGLFSVN 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28867763 28868665 - CmPI595203_05g018930.1 Cmu05g1893 416807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1893 204 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 17 101 IPR003676 GO:0009733(InterPro)
Cmu05g1893 204 Pfam Auxin responsive protein 16 102 IPR003676 GO:0009733(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0477 Cmu-Chr2:4291282 Cmu05g1893 Cmu-Chr5:28867763 3.50E-49 dispersed
Cmu05g2681 Cmu-Chr5:35333587 Cmu05g1893 Cmu-Chr5:28867763 6.00E-18 transposed
Cmu11g0385 Cmu-Chr11:4221291 Cmu05g1893 Cmu-Chr5:28867763 6.00E-44 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1893 K14488 - csv:101216342 301.597