Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1900 ATGTCTACGCTCGACGCCGGTTCCAAGGTCGAGGAGGTTAAGGAGAAGGAAGAGAAGGCAGGGGAGCTTTTGTTCTGTGGTGCTACCTGCTGGGATATAATTGGTCGGAAAAAAGGTTCCGTTGAAGGCAACTTGGTCTCTCCCACTCGCCTTCGCCCGCTCGTGGGCGTTGACATTCGTTTTGTTGCTGCTGGTTGCAGTAAGTTTTTGCTACTCTGTTCAGGGGTTGAGATTTTTTGGGTTTTAAGTAGGTTTTGCTCGGCCAGTGAAGTGGTTTTTGACGTTTTGAATGTTAATCTTGGCGTAGCATCGTGTCATTGTGTGGCATTGGACGTGGAAGGGCGTTGCTATACCTGGGGACGCAATGAGGCATGTTTACTCTCAACTTTGAAGCTTGGAAGCCGTTTTGGTCAATTGGGTCATGGAGATCTGATTCAGCGAGATAGGCCTACTATAGTATCTGGCCTTTCAAAGTACAAGGTGGTTAAAGCTGGAGCAGGGAGAAACCACACTGTGGTGGTCACTGAGGATGGAAATTCCCTATCCTTCGGTTGGAACAAACATGGCCAGTTGGGTTCAGGCTCAGTAAAAAATGAGATTGAGTCATCTCCTGTGCGTTGTCTCGTTTCTGAAGTGAAAAATACTGCCTGTGGGGGTGAATTCACCGTGTGGTTATCATCTATTGAAGGAGCTTCCATACTCACTGCGGGTCTTCCTCAGTATGGACAGCTTGGTCATGGAACAGATAATGAGTACAACACAAAGGATAGCTCAGTAAGACTTGCTTACGAAGCCCAACCACGCCCCCGAGCAATTGCTTGCCTTTCTGGAGAAAAGATTGTTAAAGTTGCATGTGGAACGAATCATACAGTGGCTGTGGATTCTAATGGCTATGTCTACACGTGGGGCTTTGGCGGTTATGGAAGACTTGGGCATAGAGAGCAGAAGGATGAATGGGCCCCTCGACGTGTCGATGTATTCCAGAGGAAAAATACTTTGCCACCTGATGCTATCATTTCAGCAGGGTCTGTGAACTCTTCTTGTACTGCAGGTGGAGGGCAGCTTTATATGTGGGGAAAAATAAAAAATGCCGGAGATGACTGGATGTATCCCAAACCTCTCATGGATTTAAGTGGATGGAATATAAGATGCATGGATTCGGGCAACATGCACCATTTTGTGGGTGCCGATAACTCATGCATAAGTTGGGGCCATGCACAATATGGAGAGCTCGGATATGGCCCAATGGGTCAGAAGTCTTCGGCGGTACCCAAAAAGGTTGATATCCTGGAGAACATGCATGTCATAAGTGTTGCATGTGGTGCTGGACACTCTATGGTTGTTGTTGATAGAACAAATGTAGCTGATCGACTTGATCAGCTTGATATACACGATGGGAAAGCTTTTGATGAAGAGAATGCAGTATCGGAAGCGTTACCACAGAGTAAAGGTTCAGCCATCAAGCCAACTCCAAAGGCTGCTAAAGCATCTCAGAATGCCAAGAAGAGGAAGAAATCAAAAGATTTGTCTGACTCGGAGGAAGAAGAGGAGGAAAATGAAGATGGTGACAGCAGTGATGAAGAGGCCAACGGGCTATCAGATACGAGTGAACAGTATGGAAGCAAAAGTAAGGGTAGAGGTAGAGGAAAGGGTAGTAAAAACTCATCCAGTGGAGGGAAAGGCAGTGGTCGTGGACGGGGTCGTCCCCCATCGAACAACAAGAAACCAGCAGCTTCTCAAGGAAAAGCAGTAGGAGCTAAGAGAGAACTTCAGCAACTTTTTTTGAGTTTTGAAGATGATCACGTACGACATCCGATATTTGACGAGTCTCGATGGAATTTGTGCTGGGGCCAATTCGAGCAATCATGTTTGCTTCTAAAGCAAGGAACGGTTCATCTTGCTCCTAACCGTGCTTTGCTGGAATACAGCAATGGGAGAGAGGGAGGACCCATCTTCAAGGACTCTTAA 1968 46.8 MSTLDAGSKVEEVKEKEEKAGELLFCGATCWDIIGRKKGSVEGNLVSPTRLRPLVGVDIRFVAAGCSKFLLLCSGVEIFWVLSRFCSASEVVFDVLNVNLGVASCHCVALDVEGRCYTWGRNEACLLSTLKLGSRFGQLGHGDLIQRDRPTIVSGLSKYKVVKAGAGRNHTVVVTEDGNSLSFGWNKHGQLGSGSVKNEIESSPVRCLVSEVKNTACGGEFTVWLSSIEGASILTAGLPQYGQLGHGTDNEYNTKDSSVRLAYEAQPRPRAIACLSGEKIVKVACGTNHTVAVDSNGYVYTWGFGGYGRLGHREQKDEWAPRRVDVFQRKNTLPPDAIISAGSVNSSCTAGGGQLYMWGKIKNAGDDWMYPKPLMDLSGWNIRCMDSGNMHHFVGADNSCISWGHAQYGELGYGPMGQKSSAVPKKVDILENMHVISVACGAGHSMVVVDRTNVADRLDQLDIHDGKAFDEENAVSEALPQSKGSAIKPTPKAAKASQNAKKRKKSKDLSDSEEEEEENEDGDSSDEEANGLSDTSEQYGSKSKGRGRGKGSKNSSSGGKGSGRGRGRPPSNNKKPAASQGKAVGAKRELQQLFLSFEDDHVRHPIFDESRWNLCWGQFEQSCLLLKQGTVHLAPNRALLEYSNGREGGPIFKDS 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28923083 28928967 - CmPI595203_05g019000.1 Cmu05g1900 416814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1900 655 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 114 177 IPR000408 -
Cmu05g1900 655 PRINTS Chromosome condensation regulator RCC1 signature 283 299 IPR000408 -
Cmu05g1900 655 PRINTS Chromosome condensation regulator RCC1 signature 180 196 IPR000408 -
Cmu05g1900 655 PRINTS Chromosome condensation regulator RCC1 signature 299 313 IPR000408 -
Cmu05g1900 655 PRINTS Chromosome condensation regulator RCC1 signature 161 174 IPR000408 -
Cmu05g1900 655 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 297 352 IPR000408 -
Cmu05g1900 655 MobiDBLite consensus disorder prediction 475 585 - -
Cmu05g1900 655 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 164 174 IPR000408 -
Cmu05g1900 655 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 231 296 IPR000408 -
Cmu05g1900 655 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 438 448 IPR000408 -
Cmu05g1900 655 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 178 228 IPR000408 -
Cmu05g1900 655 SUPERFAMILY RCC1/BLIP-II 102 451 IPR009091 -
Cmu05g1900 655 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 283 293 IPR000408 -
Cmu05g1900 655 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 398 451 IPR000408 -
Cmu05g1900 655 Gene3D - 86 257 IPR009091 -
Cmu05g1900 655 Gene3D - 258 467 IPR009091 -
Cmu05g1900 655 MobiDBLite consensus disorder prediction 512 530 - -
Cmu05g1900 655 Pfam Regulator of chromosome condensation (RCC1) repeat 177 223 IPR000408 -
Cmu05g1900 655 Pfam Regulator of chromosome condensation (RCC1) repeat 399 448 IPR000408 -
Cmu05g1900 655 Pfam Regulator of chromosome condensation (RCC1) repeat 135 174 IPR000408 -
Cmu05g1900 655 Pfam Regulator of chromosome condensation (RCC1) repeat 296 330 IPR000408 -
Cmu05g1900 655 Pfam Regulator of chromosome condensation (RCC1) repeat 234 293 IPR000408 -
Cmu05g1900 655 PANTHER PROTEIN RCC2 93 588 IPR028641 GO:0016020(PANTHER)|GO:0031267(PANTHER)|GO:0034260(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1900 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1900 Cmu-Chr5:28923083 Cmu11g1695 Cmu-Chr11:29156718 5.70E-16 dispersed
Cmu05g1900 Cmu-Chr5:28923083 Cmu04g0836 Cmu-Chr4:22870110 4.80E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1072 Blo01g01588 Blo12g00893 Bda01g00499 Bda03g00278 Bpe02g00361 Bpe04g00234 Bma04g00236 . Cmo05g00299 Cmo12g00368 Cma01g01954 . Car01g01526 Car12g00395 . . Cpe07g00375 Bhi04g00241 . . . Hepe10g0136 . . . . . . . . . Cone4ag1957 Cone7ag1870 Cone17ag1390 Cone20ag0091 Lsi04g01722 Csa03g04258 Chy04g00437 Cme03g01895 . . . . . . . . Sed11g1080 Cmo01g02013 . Cma12g00418 Cma05g00294 Car05g00243 . Cpe11g00244 Cpe02g00087 Bhi09g02116 Tan01g4991 Cmetu03g0968 . Hepe01g1635 Mch11g0138 . Cla05g01894 Cam05g2029 Cec05g2038 Cco05g2095 Clacu05g2020 Cmu05g1900 Cre05g2024 Lsi08g01337 Csa02g02119 Chy03g01398 Cme04g00491
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010513 1 2 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 32