Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1910 ATGACGGATTTGTTCTATTTAGATCGGAAACAAGAGGAAGATCCAGAAGAAAGAGCAAGATCAGAACAACAATTGTTTTTATACAGCAGATCAAACAATAACCAAGAGATCTACTCCACCGGATTGCAGATATGGCCACAATATACTCACAACCATCATCATCCTCAACAACAACAAAATGTAGAGAATTACATTTCCTTTGGAGTGGGGCCTAGTAGAACGACGAGCTTCATGATCAACGGCTCTGATCATGACTTTACTTCAAGATCAGGGTTTACTATGATGAGACATGGACATGGAGGAGGATCAGGAGGAGCGAGTGGGATGAATTGTCAAGACTGTGGGAATCAAGCTAAGAAGGATTGTTCTCATTTGAGGTGTAGAACTTGTTGTAAGAGTCGAGGGTTTCACTGTCAAACTCATGTTAAGAGTACTTGGGTTCCAGCTGCTAAACGTCGGGAACGCCAGCAACAACGTCACCAACAATTTCGAACAGATCAGTCAGATCAGATCACTCCCAAAAACCATAGACAACATCAACTATCTCTTCCTCTTACTACCAATTCGGGGTTAGAAGTAGCAAATTTTCAAGGTGAATTCAATTCGTCAGCTGTTTTCCGGTGCGTCAAAGTCAGTGCGATTGACAATGTAGAAGAACAATTAGCATATCAAACAGCTGTGAACATTGGTGGACATATGTTCAAAGGAATTCTTTACGACCAAGGTCCCGAAAGCAGTCAAAATTTGAGCACCGGCGGGGACGACAGAGAAGACGGTGGCCAAGGGTTGGATCTGGTGATCGGAGCATCCAACAGTGGTGGAAGAGTTAACCAAACCACCCCATTTGTGGAGTCTTCCATGTATCCCATCCCAATCAACACATTCGCTGGAAATGGGGTGGGCCCAGTCGCGTACGCTCAAGCAAATGTGGAACAAACCGAGCCCAATTTTACTTGGGCTACTACTCAAACAGGTATCCATGAAATGATGAGAAGTGGGCCTCTTTTGGGCTGA 1014 44.28 MTDLFYLDRKQEEDPEERARSEQQLFLYSRSNNNQEIYSTGLQIWPQYTHNHHHPQQQQNVENYISFGVGPSRTTSFMINGSDHDFTSRSGFTMMRHGHGGGSGGASGMNCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQRHQQFRTDQSDQITPKNHRQHQLSLPLTTNSGLEVANFQGEFNSSAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDQGPESSQNLSTGGDDREDGGQGLDLVIGASNSGGRVNQTTPFVESSMYPIPINTFAGNGVGPVAYAQANVEQTEPNFTWATTQTGIHEMMRSGPLLG 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28988951 28994595 + CmPI595203_05g019100.1 Cmu05g1910 416824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1910 337 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 11 296 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Cmu05g1910 337 MobiDBLite consensus disorder prediction 1 21 - -
Cmu05g1910 337 NCBIfam putative zinc finger domain, LRP1 type 110 152 IPR006510 -
Cmu05g1910 337 MobiDBLite consensus disorder prediction 150 181 - -
Cmu05g1910 337 MobiDBLite consensus disorder prediction 163 181 - -
Cmu05g1910 337 Pfam Domain of unknown function (DUF702) 108 244 - -
Cmu05g1910 337 NCBIfam LRP1 C-terminal domain 196 243 IPR006511 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1910 Cmu-Chr5:28988951 Cmu05g2729 Cmu-Chr5:35793204 6.70E-29 dispersed
Cmu09g1351 Cmu-Chr9:19959574 Cmu05g1910 Cmu-Chr5:28988951 6.90E-102 transposed
Cmu01g1940 Cmu-Chr1:32742786 Cmu05g1910 Cmu-Chr5:28988951 1.90E-52 wgd
Cmu05g1910 Cmu-Chr5:28988951 Cmu07g0883 Cmu-Chr7:22238864 2.20E-43 wgd
Cmu05g1910 Cmu-Chr5:28988951 Cmu08g1400 Cmu-Chr8:26158467 2.10E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6229 PF05142 DUF702 1.40E-58 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1910 K27807 - csv:101218246 440.269