Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1912 ATGGATAAAAAGGCCAGAAACACCACCAACGTCGCTCAGGCCAGCTCTCGCAAGGGCTGCATGAGAGGCAAAGGCGGCCCAGACAACGCCTCTTGCACTTTCAAAGGCGTCCGCCAGCGTACTTGGGGCAAATGGGTGGCTGAAATTCGCGAGCCCAACCGCGGCGCTCGTCTCTGGCTCGGCACATTTGACACCGCTCATGAAGCCGCACTGGCTTATGACGCTGCGGCTCGTAAGCTCTACGGCGCTGAAGCTAAGCTCAATCTCCCTCAAACTACTCATCGTCCTCCTCCTCATGAGCTGCCTCATCAGTTGGAACGCGCTGCCCAATCTCCCTCCATAATTGATTCTTCTCCCACCGCGACGTCCTCCTCCTCCTCCTCATCTCCAATCGGAGGGCTTTGGGGAAGTGAGAACGTGAATTTTGATGAGTCGATATGGAGAGAGGCTGTGATGTCCTTGGATTTTCCTATTATTCAAGATGATCAAGGGATTTTCTTTGATGGGGTCGGCAATTGGGACACTTTGCAGTGGTGCATGTGA 543 54.14 MDKKARNTTNVAQASSRKGCMRGKGGPDNASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTAHEAALAYDAAARKLYGAEAKLNLPQTTHRPPPHELPHQLERAAQSPSIIDSSPTATSSSSSSSPIGGLWGSENVNFDESIWREAVMSLDFPIIQDDQGIFFDGVGNWDTLQWCM 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29020041 29020583 - CmPI595203_05g019120.1 Cmu05g1912 416826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1912 180 SMART rav1_2 33 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1912 180 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1912 180 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1912 180 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1912 180 MobiDBLite consensus disorder prediction 89 131 - -
Cmu05g1912 180 Pfam AP2 domain 34 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1912 180 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Cmu05g1912 180 MobiDBLite consensus disorder prediction 110 131 - -
Cmu05g1912 180 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 127 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cmu05g1912 180 MobiDBLite consensus disorder prediction 1 32 - -
Cmu05g1912 180 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677(InterPro)
Cmu05g1912 180 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g1912 180 CDD AP2 32 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0720 Cmu-Chr4:21584998 Cmu05g1912 Cmu-Chr5:29020041 1.70E-28 dispersed
Cmu05g1912 Cmu-Chr5:29020041 Cmu11g0603 Cmu-Chr11:6597673 2.50E-30 dispersed
Cmu05g1912 Cmu-Chr5:29020041 Cmu08g1408 Cmu-Chr8:26237278 2.50E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6230 PF00847 AP2 3.00E-15 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1912 - - - 0.0