Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1913 ATGAGTTTTGCTTGGTCTACTGCTTTGCTCGAGTTTGTCATGCTGGGCGTTCCATATTTTATGCGCATACAACTGCGAAGGGGGCCGATTAGAGAGATCGAACTCCATGAAACATCTTCCTCCTCATCGCAACGGCGACTCCCAAATCGTGCTCCTCTCTTCCTCCGCCGCTCTCTTAACTTAGCCTTTCAATCAGTCAACTGCTTTATTCTCTCCGGCCGACGGGGTATCATGGACGTCGATCCTCGTTACTACGACCACATCGCTGTCAATGATGGTGATGTTCAGAACATTGTTTTATCGTACCTTGTTCATAATTGTTATAAAGAAACTGCAGAGTCGTTCACTATCTGTACTGGGCTTAAGCAGCACACGGATTATCTTGTTGACATGGAAAAAAGAAAAAGAATTTATGATTTTGCAGTAGAAGGGAATGCACTTAAGGCCATTGTGTTAACAGAAGAGGTAGCACATGGTTTACTTGAGAAGAATGAGGACCTGCATTTTGATCTTTTAAGTCTTCATTTTGTTGAACTTGTTTGCTCTAGGAAATGCACAGAGGCCCTGGAATTTGCTCAGGTCAAGCTTGCTCCTTTCGGAAAGTTGCATAAATATGTGGAAAAACTTGAAGATTTCATGGCCCTCCTTGCTTACGAAGAACCAGAGAAGTCTCCAATGTTTCATCTGCTTAGTGTGGATTACCGGCAAAGAGTAGCAGAAAGTCTAAATCGAGCAATTCTTGCACATGGAAATTTGCCGAGCTATACGGCAATGGAAAGGCTGATAAAGCAGGCGACTGTAGTTAGACAGTCCTTGAGCCAAGAGCTGGGCAAGAGTTCGGTCAGGCTCACAGCAACGAGAAGTAACCAGCTTCAGAACTTGTTGCCACCCATGGTTGTGGTACGGAAGATTGGTGTCCTCTCTTCATATGCTTTAGGTGCCCGTGTAGGCCATAAACTAAGTCATCTGGGTCTCCTGAGCTTGTTCGTTTCCTTTCAGTTTGGTGACCTCGTTGTCCTAATGGCTTATATTTGGGGTCAAATCAAGTGTCCAGTTACACCATGGGCTCGTCGGTGGCACACCTCGCTGCCTGTTCATGATTCTGCAGTAGATCCCAAAGTCCCAACTCCGAATCATTTCCGTTTTTCCGGGATAATGGTATCGATTCTTTGTCTTCCATCGTCTTCCTCGTATGTTTTGCATGACAAGAGCTTCTCCTCTAGCTTCTTCCCAAAGAGGCGTTACGGAAACAGAGGTTTCCCTCGGTATTTGAGCTACTGCTCAATTACGTGCAAATTAGCTAGGGTCGTGGACTCTTCAGCTAACCCAGCTACATTGACAAAAGAAGCTCATAAGTATTTTGATCAAGCTATCATAACAGTTCGTTCAGGAGATGGAGGCCACGGTACAGTTCTTAGTATGCCCAACCAACAAACAAGCAAGTCCCAAGGAAAACATGGGAAGGAGAAGGACAAGGCGAAGAAGAAAAGTTTGTATAAAAGGGACTTTGATGGGTCTCTAATTCTTCCCATGGGTGGCCGTGGTGGAGACGTGGTAATTTATGCTGATGAGGGGAAAGACTCGCTGCTGGAGTTTCACACCAAGAGCCGGTATAATGCAAAACGTGGTGGAAATGTTGATGCAATGGGCGTTTTGACCTCCCAATTGCACAGTGGATTTGCTGCCCCAACTCTGCGTATTCCCGTTCCTATAGGTACTGTTGTAAAACGTAAAAGAGGAAAATTGTTGGCTGATCTGGTCCATCCAGGTGACGAGATTCTTGTAGCTAGAGGAGGACAAGGAGGGATAAGCTTGATAGATACGCCAGAGAGTAGAAGGAAAAGGTTGATGTCTCTGACCTCCAATGTGATGAGAGATGAAAGTGATAAGGTTCTGGTATTTGGTCAACCTGGGGAAGAGGTCAGTTTGGAGTTGATTCTACGGGTAGTTGCCGATGTCGGTCTGATTGGACTTCCTAATGCTGGAAAATCAACACTTCTTGCAGCCATTACTCTTGCAAAACCCGATATCGCAGACTATCCTTTCACTACTTTAATTCCAAACCTTGGACGCCTTGATGGGGATCCCAGTTTAGGAGCAGGAATGTATCAATCTGAAGCTACTTTAGCAGATTTACCAGGTCTTATAGAAGGTGCTCATTTGGGTAAGGGTCTTGGTCGCAACTTCCTGAGACATCTGAGAAGGACCCGGCTGTTGGTTCATGTTGTTGATGCAGCTGCAGAGAACCCTGTCGATGATTATAGGACTGTGAGAGAAGAATTGCGGATGTACAATCCTAATTACCTTGAAAGACCGTATGTTGTGGTGCTAAATAAGATTGACCTTCCTGAGGCCAGGGATAGGCTTCCATCCATAACTGAAGAAATATTGAGAATTGGAACTGATGATCGTTATCCTGAGCAAATGGGATCCGAAAACAGTGTACAATCATCAGTTCTAGAAGGTGATCTTGCAACTGTTTCTTCTTTGGGAATTCCAGTTGCAGATGAAAAGGATAAAGAGATTGAAGACTATCCCCGTCCTCTTTCTGTTGTAGGCGTTAGTGTTCTGAAAGGTATCAATATAAGTTCAATGTTGGAAGAGATTCGAGCAGCATTGAGGAAGTGCAGAGATTCCGATGGTTCGGCGATATTAAATTTGGGTGGTTAA 2670 44.76 MSFAWSTALLEFVMLGVPYFMRIQLRRGPIREIELHETSSSSSQRRLPNRAPLFLRRSLNLAFQSVNCFILSGRRGIMDVDPRYYDHIAVNDGDVQNIVLSYLVHNCYKETAESFTICTGLKQHTDYLVDMEKRKRIYDFAVEGNALKAIVLTEEVAHGLLEKNEDLHFDLLSLHFVELVCSRKCTEALEFAQVKLAPFGKLHKYVEKLEDFMALLAYEEPEKSPMFHLLSVDYRQRVAESLNRAILAHGNLPSYTAMERLIKQATVVRQSLSQELGKSSVRLTATRSNQLQNLLPPMVVVRKIGVLSSYALGARVGHKLSHLGLLSLFVSFQFGDLVVLMAYIWGQIKCPVTPWARRWHTSLPVHDSAVDPKVPTPNHFRFSGIMVSILCLPSSSSYVLHDKSFSSSFFPKRRYGNRGFPRYLSYCSITCKLARVVDSSANPATLTKEAHKYFDQAIITVRSGDGGHGTVLSMPNQQTSKSQGKHGKEKDKAKKKSLYKRDFDGSLILPMGGRGGDVVIYADEGKDSLLEFHTKSRYNAKRGGNVDAMGVLTSQLHSGFAAPTLRIPVPIGTVVKRKRGKLLADLVHPGDEILVARGGQGGISLIDTPESRRKRLMSLTSNVMRDESDKVLVFGQPGEEVSLELILRVVADVGLIGLPNAGKSTLLAAITLAKPDIADYPFTTLIPNLGRLDGDPSLGAGMYQSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAENPVDDYRTVREELRMYNPNYLERPYVVVLNKIDLPEARDRLPSITEEILRIGTDDRYPEQMGSENSVQSSVLEGDLATVSSLGIPVADEKDKEIEDYPRPLSVVGVSVLKGINISSMLEEIRAALRKCRDSDGSAILNLGG 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29025290 29035703 - CmPI595203_05g019130.1 Cmu05g1913 416827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1913 889 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 130 187 IPR006595 -
Cmu05g1913 889 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 435 877 IPR045086 GO:0003924(InterPro)|GO:0003924(PANTHER)|GO:0005525(PANTHER)|GO:0005525(InterPro)|GO:0005739(PANTHER)
Cmu05g1913 889 SUPERFAMILY Obg GTP-binding protein N-terminal domain 453 615 IPR036726 -
Cmu05g1913 889 PRINTS GTP1/OBG GTP-binding protein family signature 726 744 IPR006073 GO:0005525(InterPro)
Cmu05g1913 889 PRINTS GTP1/OBG GTP-binding protein family signature 653 673 IPR006073 GO:0005525(InterPro)
Cmu05g1913 889 PRINTS GTP1/OBG GTP-binding protein family signature 674 692 IPR006073 GO:0005525(InterPro)
Cmu05g1913 889 PRINTS GTP1/OBG GTP-binding protein family signature 709 724 IPR006073 GO:0005525(InterPro)
Cmu05g1913 889 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 651 874 IPR031167 GO:0005525(InterPro)
Cmu05g1913 889 Pfam 50S ribosome-binding GTPase 652 779 IPR006073 GO:0005525(InterPro)
Cmu05g1913 889 ProSitePatterns GTP1/OBG family signature. 711 724 IPR006074 GO:0005525(InterPro)
Cmu05g1913 889 SMART ctlh 130 187 IPR006595 -
Cmu05g1913 889 ProSiteProfiles Obg domain profile. 451 650 IPR006169 -
Cmu05g1913 889 Gene3D - 650 881 IPR027417 -
Cmu05g1913 889 SMART toby_final6 183 278 IPR013144 -
Cmu05g1913 889 Pfam GTP1/OBG 512 608 IPR006169 -
Cmu05g1913 889 Pfam CTLH/CRA C-terminal to LisH motif domain 131 272 IPR024964 -
Cmu05g1913 889 NCBIfam small GTP-binding protein domain 652 807 IPR005225 GO:0005525(InterPro)
Cmu05g1913 889 MobiDBLite consensus disorder prediction 468 495 - -
Cmu05g1913 889 Gene3D GTP1/OBG domain 452 649 IPR036726 -
Cmu05g1913 889 ProSiteProfiles LIS1 homology (LisH) motif profile. 91 123 IPR006594 GO:0005515(InterPro)
Cmu05g1913 889 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 652 873 IPR027417 -
Cmu05g1913 889 CDD Obg 651 789 IPR031167 GO:0005525(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1913 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0652 Cmu-Chr5:5600048 Cmu05g1913 Cmu-Chr5:29025290 4.90E-53 dispersed
Cmu05g1913 Cmu-Chr5:29025290 Cmu05g2720 Cmu-Chr5:35653266 2.00E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1021 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00466 . Blo17g00770 . Bda08g01253 . . . . . . . . . . . . . . . . . . . . . Cla05g01905 Cam05g2042 Cec05g2050 Cco05g2105 Clacu05g2034 Cmu05g1913 Cre05g2035 . . . Cme04g00509
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011355 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31