Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1935 ATGCAACATTCACGTGAGGCCGGGCCATGGCTCTATGAGTCTATGCAATTGCAAAGAACGTGCATTAGACTTCCTACAGAGAGACCACGACAACCAAGTGTGGACCTCACCACAATTAACCAACAGAAAGGATCCACGTCAGCAAGTCATATAGGGGAACACGGATATTTCGGAGTGAGCGACTACAGAGAAGAATCGTCCATGAGTTCAACGGACGAGAACCGAGAAACGGGAGGAGGAGGTGGTGACGGCGACGGCGAGACGGCGGCAGCGGATAACGGTGACGACGGAGGAGACGACCTACTGTTAATCACTTGGATTATTTGTTTCTCTCGTTGTTTTCTCCGCTGCTGTTCTCATTTTTTGCGGAAATTGAATATTGGTGTCACGATGCCTCTGCGAGGCATAATTCGTGAGAAGAGTGAAATACGAGAAGGCAGTGGGAATTCATCGAAGAAAATGAGGGAGGGAGTTCAAATGCGTCATCCTGGGAAGTCGCATATTGTCCCGGAACAGCCTTCTTCATCTTCTCGGGTTCCGATTGAACAGAGCCGTTGGGCGAATTTGCCTCCGGAGCTTCTTTTGGACATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCCTCTCGCCGGGATGTTGTTACCTGTGCTTCAGTTTGCAGGTCATGGCGAATGGTTACAAAGGAAGTCGTTAGGACTCCCGAACAGTGTGGGTGGATCACGTTCCCAATCTCTCTGAAACAGCCGGGACCAAGAGACACTCCGATCCAATGCTTCATTAAGAGAGAAAGGGCTACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGCCCTGTCGGGTAATCTAAGTAAACTGTTGCTAACTGCGAAAAGAATCCGACGAGCAATGAGTACAGATTTCATTGTATCATTAGTACCAGACGACTTCTCTCGAGCAAGCAACAATTATATAGGAAAGTTGAGGTCAAATTTTCTGGGGACCAAGTTTTCAATTTACGACAGTCAGCCTCCTCATGCCCCAAAATTGCAAACCAGTAGATCGAAAAGAAAAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCAATGAACTACAAAGTCGCTGCTGTAGCTTACGAGCTCAACGTCCTCCGCACCAGGGGGCCGAGAAGAATGAGGTGCACCATGCATTCAATACCTATTGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCAACAGAGTTCAAAGACTGTATCAATGAGCATCATTCATCTACATTGATTTCCAAAGGAAAGAAGCCGATAACCGGGTCCCCCGAGCCTCAGGAACCGATATCTCCATTGGTACTGAAGAACAAAGCTCCGAGATGGCACGAACAGCTTCAGTGTTGGTGCTTAAACTTCAAAGGGCGTGTCACGGTTGCCTCGGTGAAGAACTTCCAGCTGGTTGCTGCTGCGGAGACGAGTCAAAATGTATCTGCAGCAGAACAAGAGAGAGTGATCTTGCAGTTTGGTAAGATTGGGAAGGATATTTTCACGATGGATTATCGCTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGTCTTAGTAGCTTTGATACCAAGCCAGCCTGTGAATGA 1611 48.04 MQHSREAGPWLYESMQLQRTCIRLPTERPRQPSVDLTTINQQKGSTSASHIGEHGYFGVSDYREESSMSSTDENRETGGGGGDGDGETAAADNGDDGGDDLLLITWIICFSRCFLRCCSHFLRKLNIGVTMPLRGIIREKSEIREGSGNSSKKMREGVQMRHPGKSHIVPEQPSSSSRVPIEQSRWANLPPELLLDIIQRVEASETSWPSRRDVVTCASVCRSWRMVTKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTDFIVSLVPDDFSRASNNYIGKLRSNFLGTKFSIYDSQPPHAPKLQTSRSKRKIHLKQVSPSKTPMNYKVAAVAYELNVLRTRGPRRMRCTMHSIPIAAVEEGGTAPTPTEFKDCINEHHSSTLISKGKKPITGSPEPQEPISPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29236522 29239850 + CmPI595203_05g019350.1 Cmu05g1935 416849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1935 536 Gene3D - 180 234 - -
Cmu05g1935 536 ProSitePatterns Tub family signature 2. 521 536 IPR018066 -
Cmu05g1935 536 Gene3D Tubby Protein; Chain A 244 536 IPR025659 -
Cmu05g1935 536 CDD F-box_AtTLP-like 186 230 - -
Cmu05g1935 536 ProSitePatterns Tub family signature 1. 464 477 IPR018066 -
Cmu05g1935 536 SUPERFAMILY Tubby C-terminal domain-like 235 536 IPR025659 -
Cmu05g1935 536 PANTHER TUBBY-RELATED 145 535 - -
Cmu05g1935 536 Pfam F-box-like 186 228 IPR001810 GO:0005515(InterPro)
Cmu05g1935 536 PRINTS Tubby superfamily signature 464 480 IPR000007 -
Cmu05g1935 536 PRINTS Tubby superfamily signature 318 342 IPR000007 -
Cmu05g1935 536 PRINTS Tubby superfamily signature 493 512 IPR000007 -
Cmu05g1935 536 PRINTS Tubby superfamily signature 514 536 IPR000007 -
Cmu05g1935 536 PRINTS Tubby superfamily signature 366 393 IPR000007 -
Cmu05g1935 536 PRINTS Tubby superfamily signature 446 463 IPR000007 -
Cmu05g1935 536 PRINTS Tubby superfamily signature 302 318 IPR000007 -
Cmu05g1935 536 SUPERFAMILY F-box domain 175 229 IPR036047 GO:0005515(InterPro)
Cmu05g1935 536 MobiDBLite consensus disorder prediction 26 92 - -
Cmu05g1935 536 MobiDBLite consensus disorder prediction 143 177 - -
Cmu05g1935 536 Pfam Tub family 247 531 IPR000007 -
Cmu05g1935 536 MobiDBLite consensus disorder prediction 143 162 - -
Cmu05g1935 536 MobiDBLite consensus disorder prediction 31 49 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1935 Cmu-Chr5:29236522 Cmu08g0647 Cmu-Chr8:18687510 3.60E-117 dispersed
Cmu05g1098 Cmu-Chr5:10393178 Cmu05g1935 Cmu-Chr5:29236522 8.90E-119 transposed
Cmu09g0329 Cmu-Chr9:3150997 Cmu05g1935 Cmu-Chr5:29236522 1.80E-12 transposed
Cmu01g1898 Cmu-Chr1:32454499 Cmu05g1935 Cmu-Chr5:29236522 2.00E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6232 PF01167 Tub 3.00E-105 CL0395 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1935 K19600 - csv:101222500 751.125