Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1960 ATGAATGTTCATGGGGTAGGAATTGAAGCATCAAAGTTTTGGGTGGTTTCATTGTTCAAGAGTGCGACACGTGGCGTGTCCTTGGCCGTTGGTTCATTCCACTTTTTGCTTTCCGAGCGTGCACCGGCGGTGGCGATAGCAAGAAGAATATCCAGCACTTGTTCCACAATGCCAGGAAGAAGCGTGGAAGACGATCTTGATTCCAATTCTGCACTATTGACTTGTTTAAACCCTAATTATTTGGAATCTGCTGGCGATTTTTTACTCCGGCTCCATCTTCCAGCAACTCTAATGTTTGGTCGGTGGTCTACTTCTCATCACGAGGAAGAGAACAATCCAGAGCAGATCACGTCGAAGGTCAATGAGCTAAAGGCTAAGTTAGGATCCTTAGTTGGACGCAATGCAATATATTGCAGTGATGCATGCTTGAAAAGATATCTAGTGGCCAGGAATTGGAATGTAGACAAAGCAAAGAAAATGCTGGAAGAGACATTCAAATGGAGATCTATGTATAAGCCTGAGGAAATTCGTTGGCCCGAAATAGCACTTGAAAGTGAGACTGGAAAACTTTATCGAGCAAGTTTTCACGACCGAGAAGGAAGAAGCGTTCTTATAATGAAGCCAGGAAAGCAGAACACGGCATCGATAGAAAATCAGATCCGGCATTTGGTATATCTTATGGAGAATGCTCTTCTCAACCTTCCTGAAGGTCAGGAGCAGATGTCATGGCTAATTGATTTTAATGGTTGGTCTCTTAGCACCAGCGTGCCAATCAAATCTGCACGGGAGACCGTCAACATCTTGCAGAACCACTACCCCGAGAGACTAGCCCTTGCGTTTCTATATAATCCCCCAAGGATATTTGAAACGTTCTGGAAGGTAGTCAAGTACCTTTTAGATCCCAAAACATTTCAGAAAGTGAGATTTGTTTATCCTAAGAAGCAAGAGAGTGTGGAACTCATGAAGTCATATTTTGATGAGGAGAATCTTCCGTCAGAGTTTGGAGGAAAAGCCCAACTGGAATATGTCCATGAGGAGTACTCTAGGTTAATGATTCAAGATGATATTAAATGTGCTGCCTTCTGGGAACATGGTGAAAAGCAACACCATATTGTCAATGGCTACTCCAGTGCAGTGGTGGCTCCAGAGTGA 1152 43.66 MNVHGVGIEASKFWVVSLFKSATRGVSLAVGSFHFLLSERAPAVAIARRISSTCSTMPGRSVEDDLDSNSALLTCLNPNYLESAGDFLLRLHLPATLMFGRWSTSHHEEENNPEQITSKVNELKAKLGSLVGRNAIYCSDACLKRYLVARNWNVDKAKKMLEETFKWRSMYKPEEIRWPEIALESETGKLYRASFHDREGRSVLIMKPGKQNTASIENQIRHLVYLMENALLNLPEGQEQMSWLIDFNGWSLSTSVPIKSARETVNILQNHYPERLALAFLYNPPRIFETFWKVVKYLLDPKTFQKVRFVYPKKQESVELMKSYFDEENLPSEFGGKAQLEYVHEEYSRLMIQDDIKCAAFWEHGEKQHHIVNGYSSAVVAPE 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29399606 29402673 - CmPI595203_05g019600.1 Cmu05g1960 416874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1960 383 Pfam CRAL/TRIO domain 187 336 IPR001251 -
Cmu05g1960 383 SUPERFAMILY CRAL/TRIO N-terminal domain 107 180 IPR036273 -
Cmu05g1960 383 SMART sec14_4 184 339 IPR001251 -
Cmu05g1960 383 Pfam CRAL/TRIO, N-terminal domain 139 163 IPR011074 -
Cmu05g1960 383 SUPERFAMILY CRAL/TRIO domain 178 354 IPR036865 -
Cmu05g1960 383 CDD SEC14 196 337 IPR001251 -
Cmu05g1960 383 FunFam Phosphatidylinositol transfer protein 3 100 371 - -
Cmu05g1960 383 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 178 342 IPR001251 -
Cmu05g1960 383 PANTHER GH16843P 106 368 IPR052578 GO:0008526(PANTHER)
Cmu05g1960 383 SMART CRAL_TRIO_N_2 139 164 IPR011074 -
Cmu05g1960 383 Gene3D - 100 371 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1960 K26544 - - csv:101203752 565.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1960 Cmu-Chr5:29399606 Cmu07g0921 Cmu-Chr7:23330235 5.40E-107 dispersed
Cmu04g0527 Cmu-Chr4:18495888 Cmu05g1960 Cmu-Chr5:29399606 4.10E-71 transposed
Cmu11g1536 Cmu-Chr11:27655134 Cmu05g1960 Cmu-Chr5:29399606 1.60E-70 transposed
Cmu01g1884 Cmu-Chr1:32376880 Cmu05g1960 Cmu-Chr5:29399606 6.40E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g936 . . . . . . . . . . Cma01g01905 . Car01g01486 . . . . . . . . . . . . . . . . . . . . Cone17ag1336 . Lsi04g01657 Csa03g04202 Chy04g00516 . . . . . . . . . . Cmo01g01968 . . . . . . Cpe02g00131 . . . . . . . Cla05g01946 Cam05g2089 Cec05g2102 Cco05g2156 Clacu05g2084 Cmu05g1960 Cre05g2079 . . . Cme04g00574
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001039 2 5 1 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 3 3 2 82