Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g1970 ATGATCAAAGGACCTCCCTATCGTCCGATCACTGGTAACACCAACAATATCCACCGTCTGGATGCAGAGGCACAAGAGAAGGCGATGCCTTATATCCACCGGTGGTCCGAAGAGTATGGAAAGACGTTTGTGTACTGGTTTGGGTCGACACCCAGATTGACCATATCTGACCTGGATGTGATTAAGGAAGTGCTTATGAATACGAATGGGTCTTTTACAAAGACCAAGGCCAGTGGGTTTGTGAAGTTTCTGATTGGAAAAGGACTTGCCGGATTCGATGGGGAAAAATGGGCCCTCCATAGGAGGATTGCAAATCAGGCTTTCACTGTGGAGCGTGTGAAGGAATGGTTACCAGAGATTAGGTTGAGTATTTATAGTGTATTGGAGAAATGGGAAGAGATGAAGGGAGGGAAGGAGGAGTTTGAATTAGATGTCCGTAAACAACTCCATCTCCTTTCAGCAGACAACGAGAATGGAGAAGAAGAAATGCTTGGAGTGGAAGAAATCATGGATGAATACAAGACATTCTATTTTGCAGGAATGGAAACAACTGCAAATCTATTAACTTGGGCACTTCTACCACTAGCACAACATCAAGAATGGCAACACCGAGCTAGAGAAGAAGTCATCAAAGTTTGCGGCCACAAGACACCCCCTTCATCTAACCATTTAACTCAACTTAAACTGATGAGTATGATTATCAATGAAACACTTCTACTTTATCCTCCAGCGTTGTTGTTGGGGCCGCGGATAACAAAAGGAATGACTCTAGGAAGCATCGATGTTCCGAAAGGCACACAACTTCAAATTGTAGTGGCTGCAATCCACCACGACAAAGAGATTTGGGGAGAAGATGCAAGCGAATTCAACCCTCCGAGATTTAGTGCACCTAGGAAGCATCTGGCTTCATTTATGCCATTTGGTTTGGGTCCTAGAATTTGTGTAGGCCAACATTTGGCTTTGATTGAGGCCAAAGTTGCATTGGCTATGATAATTCAACGATTCTCTTTTACGATCTCTCCAACCTACATGCATGCCCCTGTGATGTTGGTAACCTTACAACCTCAGTTTGGTGTTCAACTCCTCATTAAGAGCTTATGGAATTGA 1107 43.9 MIKGPPYRPITGNTNNIHRLDAEAQEKAMPYIHRWSEEYGKTFVYWFGSTPRLTISDLDVIKEVLMNTNGSFTKTKASGFVKFLIGKGLAGFDGEKWALHRRIANQAFTVERVKEWLPEIRLSIYSVLEKWEEMKGGKEEFELDVRKQLHLLSADNENGEEEMLGVEEIMDEYKTFYFAGMETTANLLTWALLPLAQHQEWQHRAREEVIKVCGHKTPPSSNHLTQLKLMSMIINETLLLYPPALLLGPRITKGMTLGSIDVPKGTQLQIVVAAIHHDKEIWGEDASEFNPPRFSAPRKHLASFMPFGLGPRICVGQHLALIEAKVALAMIIQRFSFTISPTYMHAPVMLVTLQPQFGVQLLIKSLWN 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29491401 29493858 + CmPI595203_05g019700.1 Cmu05g1970 416884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g1970 368 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 307 316 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cmu05g1970 368 Gene3D Cytochrome P450 152 366 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cmu05g1970 368 PANTHER CYTOCHROME P450 FAMILY MEMBER 157 359 IPR050665 GO:0004497(PANTHER)
Cmu05g1970 368 Pfam Cytochrome P450 151 342 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cmu05g1970 368 Pfam Cytochrome P450 4 148 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cmu05g1970 368 Gene3D Cytochrome P450 1 151 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cmu05g1970 368 SUPERFAMILY Cytochrome P450 2 364 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cmu05g1970 368 PRINTS P450 superfamily signature 232 243 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cmu05g1970 368 PRINTS P450 superfamily signature 305 314 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cmu05g1970 368 PRINTS P450 superfamily signature 314 325 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cmu05g1970 368 PRINTS P450 superfamily signature 179 196 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cmu05g1970 368 PRINTS E-class P450 group IV signature 314 332 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cmu05g1970 368 PRINTS E-class P450 group IV signature 227 243 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cmu05g1970 368 PRINTS E-class P450 group IV signature 170 196 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cmu05g1970 368 PRINTS E-class P450 group IV signature 298 314 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g1970 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1970 Cmu-Chr5:29491401 Cmu05g1972 Cmu-Chr5:29503155 3.30E-146 dispersed
Cmu05g1970 Cmu-Chr5:29491401 Cmu05g1971 Cmu-Chr5:29496629 4.80E-145 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g915 . . . . Bpe02g00400 . . . . . . Cma09g00170 . . . Cpe06g00121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00166 . . . Car09g00149 . . . . . . . . . Cla05g01956 Cam05g2103 Cec05g2113 Cco05g2168 . Cmu05g1970 Cre05g2088 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002034 1 3 1 2 0 4 1 3 4 3 3 2 1 4 4 0 3 3 1 3 3 1 0 1 2 3 1 2 2 5 66