Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2030 ATGCAGAGCAACAGTTCTGATTCGCAGCCGCAGGAACCAAATCAACGGCATCATCAGCCGTGGATACCAATGCAGTACCCGCCGCCGGCCATGGTAATGCCTCACCATATGATGACGCCGCCCCTCCCCCCGCCGTATATGCATTATCATCACCATTATCAGCATCATCATCTCCCTATTCAGCATTCGCAACCGCTACCGGGATCTGGCGGCGAAAATAAGACGATTTGGGTCGGTGACTTGCATCATTGGATGGACGAGAGTTACCTCAATTCCTGCTTTTCTTCCATTGGCGAGATTGCAGCTCTCAAGGTCATTCGTAATAAGCAAACTGGTTTGTCTGAGGGGTATGGATTTGTAGAATTTTTTTCTCATGCAACAGCTGAGAAAGCTCTTCAGAACTATTCCGGAGTGTTCATGCCAAATACAAAGCAAACTTTCCGCCTCAATTGGGCAACATTTAGCACCAGTGACAAGCGATCGGATAATGATCCTGATCTTTCTATTTTTGTTGGAGACTTAGCTGCAGACGTTACTGATTCTTTGTTGTACGAAACATTTTCTAGTAAATTTCCTTCGGTTAAAGCAGCAAAAGTTGTAATTGATGCCAACACTGGTCGTTCAAAGGGTTATGGTTTTGTGCGGTTTGGAGATGACAACGAAAGGTCTCAAGCCATGACTGAAATGAATGGTGTATATTGTTCAAGCAGACCTATGCGCATTGGTGCAGCAACGCCCAAAAAGTCCTCTGGATTTCAGCAAAAGCATTCTCCACAAGGAGGATATTCGACAAATGGTTCCTTTAGCCATGGCCTCCAATCTGAAGGAGATTCTGCGAATACAACTATATTTGTTGGAGGGCTGGATCCTAATGTCACTGATGAAGATCTGAGACAACCTTTCTTGCAGTATGGTGAGATAGTCTCTGTTAAAATACCAGTTGGTAAAGGATGTGGGTTTGTCCAATTTGCCAACAGAAATGATGCTGAAGAGGCTTTGCAGAAACTAAATGCAACTGTAATTGGCAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAATCCAGCAAATAAGCAGTTCAGAGATTTTGGGAACCAGTGGAATGGAGCTTACTACGGAGGCCACATATATGATGGCTATGGATATGGTCTACAACCTCATCACGATCCAAGCGCTTTCCATGTAGAAACGCTGAAGTTGCTTCAACTTCTGGAATTCACTTTGTTTTAG 1227 44.5 MQSNSSDSQPQEPNQRHHQPWIPMQYPPPAMVMPHHMMTPPLPPPYMHYHHHYQHHHLPIQHSQPLPGSGGENKTIWVGDLHHWMDESYLNSCFSSIGEIAALKVIRNKQTGLSEGYGFVEFFSHATAEKALQNYSGVFMPNTKQTFRLNWATFSTSDKRSDNDPDLSIFVGDLAADVTDSLLYETFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPKKSSGFQQKHSPQGGYSTNGSFSHGLQSEGDSANTTIFVGGLDPNVTDEDLRQPFLQYGEIVSVKIPVGKGCGFVQFANRNDAEEALQKLNATVIGKQTVRLSWGRNPANKQFRDFGNQWNGAYYGGHIYDGYGYGLQPHHDPSAFHVETLKLLQLLEFTLF 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30024836 30028225 - CmPI595203_05g020300.1 Cmu05g2030 416944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2030 408 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 56 354 IPR050825 GO:0003729(PANTHER)|GO:0003729(InterPro)|GO:0005829(PANTHER)
Cmu05g2030 408 SUPERFAMILY RNA-binding domain, RBD 273 373 IPR035979 GO:0003676(InterPro)
Cmu05g2030 408 CDD RRM1_SECp43_like 75 155 - -
Cmu05g2030 408 Pfam RNA recognition motif 169 238 IPR000504 GO:0003723(InterPro)
Cmu05g2030 408 Pfam RNA recognition motif 76 143 IPR000504 GO:0003723(InterPro)
Cmu05g2030 408 Pfam RNA recognition motif 283 346 IPR000504 GO:0003723(InterPro)
Cmu05g2030 408 FunFam Polyadenylate-binding protein RBP47 263 382 - -
Cmu05g2030 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 353 IPR000504 GO:0003723(InterPro)
Cmu05g2030 408 CDD RRM2_SECp43_like 166 245 - -
Cmu05g2030 408 FunFam Polyadenylate-binding protein RBP47B 73 153 - -
Cmu05g2030 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 246 IPR000504 GO:0003723(InterPro)
Cmu05g2030 408 CDD RRM3_NGR1_NAM8_like 280 351 - -
Cmu05g2030 408 SUPERFAMILY RNA-binding domain, RBD 148 269 IPR035979 GO:0003676(InterPro)
Cmu05g2030 408 SUPERFAMILY RNA-binding domain, RBD 40 156 IPR035979 GO:0003676(InterPro)
Cmu05g2030 408 Gene3D - 274 384 IPR012677 -
Cmu05g2030 408 Gene3D - 153 273 IPR012677 -
Cmu05g2030 408 SMART rrm1_1 168 242 IPR000504 GO:0003723(InterPro)
Cmu05g2030 408 SMART rrm1_1 75 150 IPR000504 GO:0003723(InterPro)
Cmu05g2030 408 SMART rrm1_1 282 349 IPR000504 GO:0003723(InterPro)
Cmu05g2030 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 154 IPR000504 GO:0003723(InterPro)
Cmu05g2030 408 MobiDBLite consensus disorder prediction 1 18 - -
Cmu05g2030 408 MobiDBLite consensus disorder prediction 1 25 - -
Cmu05g2030 408 Gene3D - 73 152 IPR012677 -
Cmu05g2030 408 MobiDBLite consensus disorder prediction 247 266 - -
Cmu05g2030 408 MobiDBLite consensus disorder prediction 244 266 - -
Cmu05g2030 408 FunFam Polyadenylate-binding protein RBP47B 155 257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2030 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2024 Cmu-Chr5:29975580 Cmu05g2030 Cmu-Chr5:30024836 6.70E-204 dispersed
Cmu05g2025 Cmu-Chr5:29982893 Cmu05g2030 Cmu-Chr5:30024836 1.80E-209 dispersed
Cmu05g2030 Cmu-Chr5:30024836 Cmu09g1678 Cmu-Chr9:32579183 2.00E-123 dispersed
Cmu05g2027 Cmu-Chr5:30000369 Cmu05g2030 Cmu-Chr5:30024836 1.10E-208 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117