Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2059 ATGGAAAATGATGATCTAAAATCGGAAGATCAGATGGAGATTATGATGATGATGCAACAAATGGAAAAAATCCCTGAATTTTACAATGATTTCTCACCGCCGTCCTCTGATTTCAGCTCAAGCAGCACCGATCACCCACATTGCCACCTGGATTCTTCCTCATCGCCTCCCTTATGCATCAACAACCCACCTTATAATAATTTCCCACAATCTACTGTTTCATTCCCGGCCACCACTTCACGGTGGCGAAACTCCGGTGGTGAAACAGAGAGTTTGCAGAAACAGAGGTCAGTGGCGGCGATGAGGGAGATGATATTCCGAATAGCAGTGATGCAACCAATTCACATAGACCCAGAAGCGGTGAAGCCACCAAAAAGAAGGAACGTCAAGATTTCAACTGACCCACAAAGCGTAGCGGCTAGGCATAGGAGAGAGAGAATTAGTGAGAGAATTAGAATACTTCAAAGACTGGTCCCTGGAGGTACTAAAATGGACACTGCTTCTATGTTGGATGAAGCTATTCATTATGTTAAATTCTTAAAGACCCAAGTTCAGTCACTTGAAAGAGCCGCCGCCGCCGGCGGGAACCGCCCAATCACTGGTGCTGCTGCTAGCGTCGGGTTCCCTTTGGAAATGTCAACTGGGAGCTACATCCCCAATCACTCACAACCTTGA 675 46.52 MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSSSTDHPHCHLDSSSSPPLCINNPPYNNFPQSTVSFPATTSRWRNSGGETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAAAGGNRPITGAAASVGFPLEMSTGSYIPNHSQP 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30274809 30275483 - CmPI595203_05g020590.1 Cmu05g2059 416973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2059 224 FunFam BHLH transcription factor 134 197 - -
Cmu05g2059 224 MobiDBLite consensus disorder prediction 32 49 - -
Cmu05g2059 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983(InterPro)
Cmu05g2059 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 190 IPR036638 GO:0046983(InterPro)
Cmu05g2059 224 CDD bHLH_AtIND_like 132 188 - -
Cmu05g2059 224 MobiDBLite consensus disorder prediction 28 49 - -
Cmu05g2059 224 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 28 201 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2059 224 SMART finulus 137 186 IPR011598 GO:0046983(InterPro)
Cmu05g2059 224 Gene3D - 134 196 IPR036638 GO:0046983(InterPro)
Cmu05g2059 224 Pfam Helix-loop-helix DNA-binding domain 140 181 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2059 Cmu-Chr5:30274809 Cmu09g0035 Cmu-Chr9:654110 1.80E-30 dispersed
Cmu02g1272 Cmu-Chr2:25901469 Cmu05g2059 Cmu-Chr5:30274809 1.00E-40 transposed
Cmu04g0733 Cmu-Chr4:21759887 Cmu05g2059 Cmu-Chr5:30274809 2.20E-21 transposed
Cmu01g1643 Cmu-Chr1:30130075 Cmu05g2059 Cmu-Chr5:30274809 3.30E-06 wgd
Cmu05g2059 Cmu-Chr5:30274809 Cmu08g1538 Cmu-Chr8:27224156 9.30E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6236 PF00010 HLH 1.40E-06 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2059 - - - 0.0