Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2060 ATGGTGCTATTGATTGCTTCTTCGTCCATTGATTCGGGGATTGGTTGCTGGGACCTTCAAACGGGTGCGGAACAACTACGTTACAAGTCTTGTGCTTCTCCGGCACATGGTCTTGTTTGTGTTGGTGAAAAATTTCTTGCATGCTCTCAGCTCCGCGATCCCGCTGCCACAGCAGGCTCTGTTCTCTACTGGTCTTGGTGTAAGCCTCAAGTAGAAGTTAAGAGCTTTCCGGCTGAACCATTGATGGCCTTGGCTTCCAACAATGAGGGTACTTATATCGTTGGTGGTGGTTTCTCTGGAGATATATACTTCTGGGAGGTTTTGAGTGGTAGACTGCTTAAGAAGTGGCATGCTCATTATAGGGCAGTTACTTGCCTCTTATTCTCTGAAGATGACTCCCTGCTAATTTCTGGTTCTGAAGATGGCTGCATTAGAGTTTGGTCCCTGCTAACGGTATTTGATGATGGATGGCATAGCGAATCAAAACATTTGTATGAACATAGTTTCACTGGGCATAATCTACCCGTTACCGATATTGCTGTTGGCTATGGAGGATCAAATGCTATTATAATCTCTTCCTCTGTGGATCGTACTTGTAAGGTGTGGAGCTTATCTAAGGGGAAATTATTAAGAAATATCATATTTCCTTCCATCATTGATGCAATTGCATTGGATCCTGCCGAACATGTCTTCTATGCTGGTGGTAGAGATGGGAAGATCTACACTGCTGCGCTTAATGCTAAATGCCCAGCCAGCAGTGACTACGGATTGCACATTCTCGGCTCATTATCAAATCAAAGCAAGTCTGTTACTTCCTTGGCATTCTGCTCAAGTGGTAATTTGTTGATATCCGGATCTGAGGATGGAGCAATAAGAGTTTGGGATACAAGAACCAATAATATTATTCGTGTATTCAGACATTCAAAAGGTCCTATAAATAATATACTTGTTGTTCGACAACAGCTCCTTCCTAAACCACAGTCAACTTCCCAAGGTTCTCTGAGAAAGCATCGGTCACTGTTACCTCCTGCCCTCGCGAAATTTGAGAACTCAAAGGACGAGGATGAAGACACTGGTGTTATCATTGGTCCATCAGGTCCTCTCAAGGAATTTATGGGGCTTTCCCCCCTTAGTTCTCACGTGATGGATAATCAAATCACAGAACTTCAGCAACAGGGTTCTGCTGCCACGGGAATGGAGTTGGAAAGACTTAAGTATGATCGTGAAAAATCAGTTCAAATGCTACAACATTGGAGAAAAATCGTTCCCAACGTTATCAGTGAGAAAAATTTCACCCTATTGCACCAGCTTCCTACTCTTCTATTTCAAACGGTGACGTATTCAATCAAAAATCCACTATTCTTCTTCCATTTGGTTTTCCCCCTCCTCTTGCTCTTGATTCTTGCCACGTACTCACCGCCGGAGAATCAAACGGCTCCTGCACCTCACCGCCAATTGTAA 1461 43.74 MVLLIASSSIDSGIGCWDLQTGAEQLRYKSCASPAHGLVCVGEKFLACSQLRDPAATAGSVLYWSWCKPQVEVKSFPAEPLMALASNNEGTYIVGGGFSGDIYFWEVLSGRLLKKWHAHYRAVTCLLFSEDDSLLISGSEDGCIRVWSLLTVFDDGWHSESKHLYEHSFTGHNLPVTDIAVGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPAEHVFYAGGRDGKIYTAALNAKCPASSDYGLHILGSLSNQSKSVTSLAFCSSGNLLISGSEDGAIRVWDTRTNNIIRVFRHSKGPINNILVVRQQLLPKPQSTSQGSLRKHRSLLPPALAKFENSKDEDEDTGVIIGPSGPLKEFMGLSPLSSHVMDNQITELQQQGSAATGMELERLKYDREKSVQMLQHWRKIVPNVISEKNFTLLHQLPTLLFQTVTYSIKNPLFFFHLVFPLLLLLILATYSPPENQTAPAPHRQL 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30277271 30282569 - CmPI595203_05g020600.1 Cmu05g2060 416974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2060 486 Gene3D - 162 337 IPR015943 GO:0005515(InterPro)
Cmu05g2060 486 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Cmu05g2060 486 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Cmu05g2060 486 PRINTS G protein beta WD-40 repeat signature 135 149 IPR020472 -
Cmu05g2060 486 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Cmu05g2060 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 149 IPR001680 GO:0005515(InterPro)
Cmu05g2060 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515(InterPro)
Cmu05g2060 486 SMART WD40_4 69 106 IPR001680 GO:0005515(InterPro)
Cmu05g2060 486 SMART WD40_4 109 148 IPR001680 GO:0005515(InterPro)
Cmu05g2060 486 SMART WD40_4 256 295 IPR001680 GO:0005515(InterPro)
Cmu05g2060 486 SMART WD40_4 206 244 IPR001680 GO:0005515(InterPro)
Cmu05g2060 486 SMART WD40_4 162 203 IPR001680 GO:0005515(InterPro)
Cmu05g2060 486 Gene3D - 3 161 IPR015943 GO:0005515(InterPro)
Cmu05g2060 486 FunFam Protein ROOT INITIATION DEFECTIVE 3 1 242 - -
Cmu05g2060 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 298 - -
Cmu05g2060 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 149 - -
Cmu05g2060 486 PANTHER WD-REPEAT PROTEIN 18 3 425 IPR045227 GO:0005656(PANTHER)|GO:0006261(PANTHER)|GO:0006364(PANTHER)|GO:0097344(PANTHER)
Cmu05g2060 486 SUPERFAMILY WD40 repeat-like 5 316 IPR036322 GO:0005515(InterPro)
Cmu05g2060 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 212 IPR001680 GO:0005515(InterPro)
Cmu05g2060 486 Pfam WD domain, G-beta repeat 167 203 IPR001680 GO:0005515(InterPro)
Cmu05g2060 486 Pfam WD domain, G-beta repeat 111 148 IPR001680 GO:0005515(InterPro)
Cmu05g2060 486 Pfam WD domain, G-beta repeat 260 295 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2060 K14829 - - csv:101204364 778.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0970 Cmu-Chr3:4305595 Cmu05g2060 Cmu-Chr5:30277271 1.60E-52 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g753 Blo01g01526 . Bda01g00570 . Bpe02g00431 . . Bma01g02270 . . . . . . . Cpe06g00165 . . . . . . . . . . . . . . . . . . . Lsi04g01549 Csa04g02420 . . . . . . . . . . Sed09g0365 . Cmo09g00230 . . . . . Cpe02g00186 Bhi09g03308 Tan01g4765 Cmetu07g1918 . Hepe01g1773 Mch11g0299 . Cla05g02050 Cam05g2202 Cec05g2219 . Clacu05g2194 Cmu05g2060 . . . Chy07g00141 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003200 1 2 2 1 1 1 1 1 1 1 1 1 2 1 2 3 1 2 2 1 1 1 2 1 2 1 3 2 8 1 50