Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2073 ATGGAAGGACAAGTTTGCTCTGCTGTAAATTCATCACCCAAGAGGAAGCAAAAGCATCAGAATCATCTCCAACAAGAAAAGCCTTACAGGGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTTGCCGAAATCAGAGAACCCAACAAACGCTCCAGGATTTGGCTTGGCTCATACACAACCCCTGTCGCCGCCGCTAGAGCTTATGACACCGCCGTCTTCTATCTCCGAGGCCCCACCGCCCGCCTTAACTTCCCCGAGTTGATGTTCGAAGCAGACCAGCTTCACGACATGTCGGCCGCCTCCATACGGAAACGAGCCACCGAAGTCGGCGCTAGGGTTGACGCCATCCAAACCTCCCTCCACGCCTCTAACTCAAACTCCAATTCCGCTACTCAAATTTCCGACAAGCCCGATTTAAACGAGTACCCCAACCCTGAAACCTCCGACGACGATTAA 456 52.85 MEGQVCSAVNSSPKRKQKHQNHLQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELMFEADQLHDMSAASIRKRATEVGARVDAIQTSLHASNSNSNSATQISDKPDLNEYPNPETSDDD 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30376286 30376741 - CmPI595203_05g020730.1 Cmu05g2073 416987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2073 151 Pfam AP2 domain 29 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2073 151 CDD AP2 29 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2073 151 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2073 151 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2073 151 PRINTS Ethylene responsive element binding protein signature 67 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2073 151 MobiDBLite consensus disorder prediction 118 138 - -
Cmu05g2073 151 FunFam Ethylene-responsive transcription factor 2 27 86 - -
Cmu05g2073 151 Gene3D AP2/ERF domain 27 87 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2073 151 SMART rav1_2 28 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2073 151 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 13 150 - -
Cmu05g2073 151 MobiDBLite consensus disorder prediction 118 151 - -
Cmu05g2073 151 MobiDBLite consensus disorder prediction 1 28 - -
Cmu05g2073 151 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1224 Cmu-Chr2:25067069 Cmu05g2073 Cmu-Chr5:30376286 3.90E-40 dispersed
Cmu05g2073 Cmu-Chr5:30376286 Cmu08g0109 Cmu-Chr8:2170118 1.20E-20 dispersed
Cmu01g1646 Cmu-Chr1:30187534 Cmu05g2073 Cmu-Chr5:30376286 1.70E-39 wgd
Cmu05g2073 Cmu-Chr5:30376286 Cmu08g1548 Cmu-Chr8:27318969 2.30E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6239 PF00847 AP2 2.20E-11 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2073 K09286 - csv:101219005 268.855