Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu05g2073 | ATGGAAGGACAAGTTTGCTCTGCTGTAAATTCATCACCCAAGAGGAAGCAAAAGCATCAGAATCATCTCCAACAAGAAAAGCCTTACAGGGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTTGCCGAAATCAGAGAACCCAACAAACGCTCCAGGATTTGGCTTGGCTCATACACAACCCCTGTCGCCGCCGCTAGAGCTTATGACACCGCCGTCTTCTATCTCCGAGGCCCCACCGCCCGCCTTAACTTCCCCGAGTTGATGTTCGAAGCAGACCAGCTTCACGACATGTCGGCCGCCTCCATACGGAAACGAGCCACCGAAGTCGGCGCTAGGGTTGACGCCATCCAAACCTCCCTCCACGCCTCTAACTCAAACTCCAATTCCGCTACTCAAATTTCCGACAAGCCCGATTTAAACGAGTACCCCAACCCTGAAACCTCCGACGACGATTAA | 456 | 52.85 | MEGQVCSAVNSSPKRKQKHQNHLQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELMFEADQLHDMSAASIRKRATEVGARVDAIQTSLHASNSNSNSATQISDKPDLNEYPNPETSDDD | 151 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 30376286 | 30376741 | - | CmPI595203_05g020730.1 | Cmu05g2073 | 416987 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu05g2073 | 151 | Pfam | AP2 domain | 29 | 77 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu05g2073 | 151 | CDD | AP2 | 29 | 87 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu05g2073 | 151 | ProSiteProfiles | AP2/ERF domain profile. | 28 | 85 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu05g2073 | 151 | PRINTS | Ethylene responsive element binding protein signature | 29 | 40 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu05g2073 | 151 | PRINTS | Ethylene responsive element binding protein signature | 67 | 87 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu05g2073 | 151 | MobiDBLite | consensus disorder prediction | 118 | 138 | - | - | |
Cmu05g2073 | 151 | FunFam | Ethylene-responsive transcription factor 2 | 27 | 86 | - | - | |
Cmu05g2073 | 151 | Gene3D | AP2/ERF domain | 27 | 87 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu05g2073 | 151 | SMART | rav1_2 | 28 | 91 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu05g2073 | 151 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 13 | 150 | - | - | |
Cmu05g2073 | 151 | MobiDBLite | consensus disorder prediction | 118 | 151 | - | - | |
Cmu05g2073 | 151 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cmu05g2073 | 151 | SUPERFAMILY | DNA-binding domain | 28 | 86 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu02g1224 | Cmu-Chr2:25067069 | Cmu05g2073 | Cmu-Chr5:30376286 | 3.90E-40 | dispersed | |
Cmu05g2073 | Cmu-Chr5:30376286 | Cmu08g0109 | Cmu-Chr8:2170118 | 1.20E-20 | dispersed | |
Cmu01g1646 | Cmu-Chr1:30187534 | Cmu05g2073 | Cmu-Chr5:30376286 | 1.70E-39 | wgd | |
Cmu05g2073 | Cmu-Chr5:30376286 | Cmu08g1548 | Cmu-Chr8:27318969 | 2.30E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6239 | PF00847 | AP2 | 2.20E-11 | CL0081 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu05g2073 | K09286 | - | csv:101219005 | 268.855 |