Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2074 ATGAATAACAGGAATTTCGTCTGTAATCCTATGGTTGCTCTTCCATTATTACCTTCCTCTCACTTGCTGTTTTCGAATAGCGCCATTGATTTCAGGCACAGGGTCTCCATTGTTGTAAAACCCACTTTCCAGGGTTCGTGTAGATGGCGAATCCGAGCCACCGCCGAGAACGGAGCTTCATCGGCGTCGACTTCCCAGATCGACATGGTGAGGAACAGGGAGGGGGTTTTTACCGCCAAACAAAGCAAGGTTGTCGTGCTTTGGGATCTTGATAACAAACCCCCTCGTGGGCCGCCGTACGAGGCGGCTATGGGGCTGAAAAGAGTAGCGCAACGCTTCGGACAAGTCGTCGACATGTCGGCTTACGCCAATCGCCACGCCTTTATCCATTTGCCGCAATGGGTTGTTGAAGAACGCCGCGAGCGTCGGCAATTGGATATTCTTGAGCGTAAAGGGTTGTTCACGCCATCCGAATCGTACGTCTGCGGGGTTTGCGGTCGCAAGTGCAAAACAAACCTAGACCTTAAGAAGCATTTCAAGCAACTTCACGAACGCGAGCGCCAGAAGAAATTGAACAGAATGAGGTCTCTCAAGGGCAAAAAGCGACAGCGTTATAAGGAAAGGTTCGTATCTGGAAACCATAAGTACAATGAAGCAGCGAGGTCTCTGATTACTCCCAAAGTTGGATATGGATTGGCCTCAGAATTGAGACGTGCTGGGGTTTTTGTGAAGACTGTAGAGGATAAGCCTCAGGCAGCTGATTGGGCTTTGAAGAGGCAGATGCAACACTCGATGAGTCGTGGTATTGATTGGATGATTCTTGTTTCCGATGATTCGGATTTCTCAGAGATGTTAAGGAAGGCTAAGGAAGCTAATTTGGGAACTGTGGTGGTGGGAGATCGTGATAGGGCATTGGGTAGGCACGCAGATTTATGGGTTCCATGGATGGGTGTTGAAAATGGGGATATTACAGAGGAGGATTTGGTGCCCAAAAGATGGAGGATGAGAAGAAGAGACGAGGAAATGGATGGAAATGATGATGGTTTTTCAGTTTCTCGTTTCTATGGAGACACTGAAGCTGGTGATTTGGAGAGTGTAGTGGAAGAGCTTGTTTCCGCAAGTACAGAAGAGTTCAATGGCTTTAGAATTTCTGCATTTTCAGAGGGGGAAGATGAAGAAGATGATTGGGTTGAAGAAGATGTGGGATCTGACTATCTGCTAGTGATGAGTGACGAGGAAGATGGGCATTCCTGA 1254 47.93 MNNRNFVCNPMVALPLLPSSHLLFSNSAIDFRHRVSIVVKPTFQGSCRWRIRATAENGASSASTSQIDMVRNREGVFTAKQSKVVVLWDLDNKPPRGPPYEAAMGLKRVAQRFGQVVDMSAYANRHAFIHLPQWVVEERRERRQLDILERKGLFTPSESYVCGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMRSLKGKKRQRYKERFVSGNHKYNEAARSLITPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWMILVSDDSDFSEMLRKAKEANLGTVVVGDRDRALGRHADLWVPWMGVENGDITEEDLVPKRWRMRRRDEEMDGNDDGFSVSRFYGDTEAGDLESVVEELVSASTEEFNGFRISAFSEGEDEEDDWVEEDVGSDYLLVMSDEEDGHS 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30386406 30387659 - CmPI595203_05g020740.1 Cmu05g2074 416988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2074 417 ProSitePatterns Zinc finger C2H2 type domain signature. 162 183 IPR013087 -
Cmu05g2074 417 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 188 IPR013087 -
Cmu05g2074 417 MobiDBLite consensus disorder prediction 389 407 - -
Cmu05g2074 417 Gene3D - 158 316 - -
Cmu05g2074 417 Coils Coil 180 200 - -
Cmu05g2074 417 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 51 396 - -
Cmu05g2074 417 CDD PIN_LabA-like 170 300 - -
Cmu05g2074 417 MobiDBLite consensus disorder prediction 389 417 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2074 Cmu-Chr5:30386406 Cmu10g1143 Cmu-Chr10:4049985 1.60E-59 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6240 None None None None Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2074 - - - 0.0