Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2087 ATGAGAAACTATAGAATGGCGAAACGGCATTGTTACCCACTATCAATTGCACATTCAATTTCAGGTCACCAGAATTCTTCACTTCTTCTTGATTCTCTCTACTGCTTTGAAGAGGAGCTTGGAGATGGCCATTCCCAACCAAAGGTCGAAGCTTTCTCAATCAATGTTAACATCAATTCCCCAAACTCTGTGTTCTTGTCGGACAGAGACTTTCTCTGGGAAGACGAGGAATTGGTGTCTCTGTTCTCAAAGGAGAACAAAAATAAGCTCCACAACATTCTCCCACACAATCCTTCTCTAACTGCAGCTCGCTCCAAGGCGGTTGAATGGATTCTCAAGGTCAATTCCCATTACTCTTTCACTGCCCTCACCGCCGTTTTGGCTGTTGATTATGTCGATAGGTTTCTCTCCAGCCCCCATTTTCAGATTGACAAGCCATGGATGACCCATCTCACCGCCATTGCTTCTTTATCTCTCGCTGCTAAAGTGGAGGAAACCCAAGTCCCCCTTCTTTTAGACCTCCAGGTGGAGGAAAATGAGTACTTTTTCGAAGCTAAGACCATTACAAGAATGGAGATTCTTGTTCTCTCTACGCTTCTTTGGAGAATGAATCCAGTGAACCCACTTTCCTTTCTGGACTATATTGTAAGACGCCTCGGTTTCAAGGACCAGCTCTGTTCTGAATTCCTCTGTAGATGTGAAAGATTACTTCTCTCTGTCATTATAGATTGTAGATTCGTATGTTTTCTTCCATCTGTAATAGCAACCGCCATTATTTTTCAAGTTATCAACGACATAGAACCCCTAGTCGCCGCAAAATACCAGGATCAGCTTCTGGGTATTCTTCAAATCGACAAGGATAAAATGGAGGATTGCTCACGATTCATCTTAGAGGCTTCATCGAGAGGACACAAACACGAGTGGAAGAATAAACAAAGATTTGGTTTAGTCGACATGTCGTGCAGCTCAGATGATGGGAATAGGAATGTGGACATTGTCGTGTCCTCGCCGGAGACAGCAACTAAGAAGAGAAAAATTGATGAACAGCCACCGTAG 1056 43.56 MRNYRMAKRHCYPLSIAHSISGHQNSSLLLDSLYCFEEELGDGHSQPKVEAFSINVNINSPNSVFLSDRDFLWEDEELVSLFSKENKNKLHNILPHNPSLTAARSKAVEWILKVNSHYSFTALTAVLAVDYVDRFLSSPHFQIDKPWMTHLTAIASLSLAAKVEETQVPLLLDLQVEENEYFFEAKTITRMEILVLSTLLWRMNPVNPLSFLDYIVRRLGFKDQLCSEFLCRCERLLLSVIIDCRFVCFLPSVIATAIIFQVINDIEPLVAAKYQDQLLGILQIDKDKMEDCSRFILEASSRGHKHEWKNKQRFGLVDMSCSSDDGNRNVDIVVSSPETATKKRKIDEQPP 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30474705 30476022 + CmPI595203_05g020870.1 Cmu05g2087 417001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2087 351 Gene3D - 101 204 - -
Cmu05g2087 351 FunFam D6-type cyclin 87 204 - -
Cmu05g2087 351 Gene3D - 205 293 - -
Cmu05g2087 351 CDD CYCLIN_AtCycD-like_rpt1 103 201 - -
Cmu05g2087 351 SUPERFAMILY Cyclin-like 73 204 IPR036915 -
Cmu05g2087 351 CDD CYCLIN_AtCycD-like_rpt2 206 292 - -
Cmu05g2087 351 SMART cyclin_7 109 197 IPR013763 -
Cmu05g2087 351 PANTHER CYCLINS 76 262 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cmu05g2087 351 SMART Cyclin_C_2 206 323 IPR004367 -
Cmu05g2087 351 FunFam CYCLIN D32 205 294 - -
Cmu05g2087 351 Pfam Cyclin, N-terminal domain 86 204 IPR006671 -
Cmu05g2087 351 Pfam Cyclin, C-terminal domain 206 307 IPR004367 -
Cmu05g2087 351 SUPERFAMILY Cyclin-like 207 302 IPR036915 -
Cmu05g2087 351 ProSitePatterns Cyclins signature. 104 135 IPR048258 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2087 K14505 - - csv:101218302 578.556
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0662 Cmu-Chr2:6588004 Cmu05g2087 Cmu-Chr5:30474705 1.50E-58 dispersed
Cmu05g2087 Cmu-Chr5:30474705 Cmu08g1090 Cmu-Chr8:23201762 2.50E-34 dispersed
Cmu01g1656 Cmu-Chr1:30302140 Cmu05g2087 Cmu-Chr5:30474705 5.70E-60 wgd
Cmu05g2087 Cmu-Chr5:30474705 Cmu08g1552 Cmu-Chr8:27353605 3.40E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g719 Blo01g01517 Blo12g00970 . . . . Bma04g00152 . Cmo05g00163 Cmo12g00510 Cma01g01813 Cma09g00261 Car01g01415 Car12g00528 Sed10g2003 Cpe06g00180 Cpe07g00498 Bhi04g00381 Tan02g0947 Cmetu01g0988 . Hepe08g1303 . Lcy13g2102 Cla08g01590 Cam08g2089 Cec08g1670 Cco08g1802 Clacu08g1775 . Cre08g1559 . Cone7ag1351 Cone17ag0862 Cone20ag0209 Lsi04g01520 Csa04g02445 . Cme03g02070 Blo17g00869 Blo18g00706 . . Bpe02g01789 Bpe05g00034 Bma01g00666 . Sed11g0930 Cmo01g01869 Cmo09g00254 Cma12g00567 Cma05g00163 Car05g00140 Car09g00219 Cpe11g00137 Cpe02g00199 Bhi09g03276 Tan01g4734 Cmetu07g1860 . Hepe01g1799 Mch11g0329 . Cla05g02076 Cam05g2226 Cec05g2245 Cco05g2287 Clacu05g2220 Cmu05g2087 Cre05g2211 Lsi08g01495 Csa02g01926 Chy07g00160 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu05g2220 . 1 294 Core Cell Cycle Gene Families AT3G48750 85.7 2.1e-151 531.9
Cmu04g0659 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.5 9.6e-96 347.1
Cmu11g1887 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.0 3.4e-93 338.6
Cmu04g0659 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.8 4.7e-154 540.8
Cmu11g1887 . 11 309 Core Cell Cycle Gene Families AT3G54180 66.0 9.3e-118 420.2
Cmu05g2220 . 1 290 Core Cell Cycle Gene Families AT3G54180 54.1 1.8e-92 336.3
Cmu04g0659 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.5 2.7e-123 438.3
Cmu11g1887 . 11 309 Core Cell Cycle Gene Families AT2G38620 57.5 2.9e-93 338.6
Cmu11g1887 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.7 2.3e-156 548.5
Cmu04g0659 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 9.5e-118 420.2
Cmu05g2220 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.7 9.5e-94 340.5
Cmu11g1887 . 8 307 Core Cell Cycle Gene Families AT1G20930 89.0 4.5e-160 560.8
Cmu04g0659 . 1 303 Core Cell Cycle Gene Families AT1G20930 67.1 3.5e-120 428.3
Cmu05g2220 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.7 5.4e-97 351.3
Cmu02g2396 . 58 572 Core Cell Cycle Gene Families AT5G10270 75.7 4.8e-220 760.8
Cmu10g2170 . 20 481 Core Cell Cycle Gene Families AT5G10270 77.3 2.2e-209 725.3
Cmu03g2235 . 848 1166 Core Cell Cycle Gene Families AT5G10270 51.6 1.0e-97 354.4
Cmu05g1044 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 2.3e-97 353.2
Cmu05g0636 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.9 3.9e-97 352.4
Cmu03g0999 . 93 409 Core Cell Cycle Gene Families AT5G10270 53.2 8.7e-97 351.3
Cmu11g0057 . 150 466 Core Cell Cycle Gene Families AT5G10270 52.1 4.3e-96 349.0
Cmu08g0078 . 137 453 Core Cell Cycle Gene Families AT5G10270 52.7 7.4e-96 348.2
Cmu02g1753 . 193 509 Core Cell Cycle Gene Families AT5G10270 52.0 3.1e-94 342.8
Cmu02g1621 . 101 419 Core Cell Cycle Gene Families AT5G10270 51.0 5.3e-94 342.0
Cmu04g1243 . 119 437 Core Cell Cycle Gene Families AT5G10270 50.1 1.4e-91 334.0
Cmu02g2396 . 122 571 Core Cell Cycle Gene Families AT5G64960 72.9 3.7e-179 624.8
Cmu10g2170 . 84 534 Core Cell Cycle Gene Families AT5G64960 70.9 2.6e-172 602.1
Cmu05g1044 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.3 2.1e-81 300.1
Cmu03g0999 . 147 409 Core Cell Cycle Gene Families AT5G64960 52.9 3.6e-81 299.3
Cmu03g2235 . 902 1166 Core Cell Cycle Gene Families AT5G64960 50.7 8.0e-81 298.1
Cmu02g1753 . 247 509 Core Cell Cycle Gene Families AT5G64960 52.9 1.0e-80 297.7
Cmu11g0057 . 204 466 Core Cell Cycle Gene Families AT5G64960 52.9 1.0e-80 297.7
Cmu05g0636 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.8 3.9e-80 295.8
Cmu08g0078 . 191 453 Core Cell Cycle Gene Families AT5G64960 53.2 3.9e-80 295.8
Cmu02g1752 . 182 444 Core Cell Cycle Gene Families AT5G64960 52.9 3.3e-79 292.7
Cmu06g1507 . 8 414 Core Cell Cycle Gene Families AT1G73690 74.7 6.5e-172 600.5
Cmu06g1507 . 12 342 Core Cell Cycle Gene Families AT1G66750 77.7 2.2e-155 545.4
Cmu06g1507 . 8 415 Core Cell Cycle Gene Families AT1G18040 75.5 4.0e-174 607.8
Cmu04g0183 . 32 478 Core Cell Cycle Gene Families AT5G63610 78.9 7.1e-202 700.3
Cmu11g0226 . 1 481 Core Cell Cycle Gene Families AT4G28980 62.4 2.0e-175 612.5
Cmu08g0545 . 5 498 Core Cell Cycle Gene Families AT1G44110 56.8 2.7e-145 512.3
Cmu09g0226 . 225 503 Core Cell Cycle Gene Families AT1G44110 55.2 1.4e-88 323.9
Cmu05g1751 . 206 472 Core Cell Cycle Gene Families AT1G44110 55.4 1.5e-84 310.5
Cmu05g2098 . 297 576 Core Cell Cycle Gene Families AT1G44110 52.5 1.4e-82 303.9
Cmu08g1563 . 85 373 Core Cell Cycle Gene Families AT1G44110 50.2 1.7e-78 290.4
Cmu08g1228 . 286 547 Core Cell Cycle Gene Families AT1G44110 53.4 1.3e-75 280.8
Cmu09g0226 . 224 499 Core Cell Cycle Gene Families AT1G77390 51.4 3.0e-77 286.2
Cmu05g1751 . 206 472 Core Cell Cycle Gene Families AT1G77390 52.4 2.8e-75 279.6
Cmu05g2098 . 302 574 Core Cell Cycle Gene Families AT1G77390 50.5 2.0e-73 273.5
Cmu08g1228 . 286 543 Core Cell Cycle Gene Families AT1G77390 50.8 9.7e-68 254.6
Cmu05g1751 . 16 484 Core Cell Cycle Gene Families AT5G25380 53.7 5.4e-119 424.9
Cmu08g1228 . 119 559 Core Cell Cycle Gene Families AT5G25380 51.4 7.1e-103 371.3
Cmu09g0226 . 223 503 Core Cell Cycle Gene Families AT5G25380 63.7 5.6e-100 361.7
Cmu08g0545 . 216 491 Core Cell Cycle Gene Families AT5G25380 55.1 4.5e-81 298.9
Cmu05g2098 . 301 569 Core Cell Cycle Gene Families AT5G25380 52.0 2.8e-75 279.6
Cmu02g0698 . 119 344 Core Cell Cycle Gene Families AT5G25380 51.9 1.1e-58 224.6
Cmu05g1751 . 3 422 Core Cell Cycle Gene Families AT5G11300 50.8 1.5e-94 343.6
Cmu08g0545 . 207 436 Core Cell Cycle Gene Families AT5G11300 55.7 1.8e-68 256.9
Cmu05g2098 . 297 513 Core Cell Cycle Gene Families AT5G11300 55.3 7.4e-62 235.0
Cmu08g1563 . 92 307 Core Cell Cycle Gene Families AT5G11300 52.3 3.1e-60 229.6
Cmu02g0698 . 119 286 Core Cell Cycle Gene Families AT5G11300 52.1 6.5e-42 168.7
Cmu09g0226 . 189 503 Core Cell Cycle Gene Families AT1G15570 65.0 2.7e-118 422.5
Cmu08g0545 . 188 495 Core Cell Cycle Gene Families AT1G15570 52.1 3.5e-81 299.3
Cmu02g0698 . 119 348 Core Cell Cycle Gene Families AT1G15570 51.1 3.2e-58 223.0
Cmu09g0226 . 4 503 Core Cell Cycle Gene Families AT1G80370 51.4 2.5e-119 426.0
Cmu08g0545 . 217 496 Core Cell Cycle Gene Families AT1G80370 55.7 1.6e-81 300.4
Cmu05g2098 . 297 574 Core Cell Cycle Gene Families AT1G80370 51.4 9.1e-77 284.6
Cmu08g1563 . 92 370 Core Cell Cycle Gene Families AT1G80370 52.0 2.2e-75 280.0
Cmu02g0698 . 119 349 Core Cell Cycle Gene Families AT1G80370 51.7 2.8e-57 219.9
Cmu08g1563 . 5 372 Core Cell Cycle Gene Families AT5G43080 58.5 8.4e-115 410.6
Cmu05g2098 . 204 577 Core Cell Cycle Gene Families AT5G43080 57.2 1.3e-112 403.3
Cmu08g0545 . 218 498 Core Cell Cycle Gene Families AT5G43080 51.2 2.5e-79 292.7
Cmu05g1751 . 208 477 Core Cell Cycle Gene Families AT5G43080 53.7 5.7e-79 291.6
Cmu09g0226 . 226 503 Core Cell Cycle Gene Families AT5G43080 51.3 5.9e-76 281.6
Cmu08g1228 . 283 561 Core Cell Cycle Gene Families AT5G43080 50.4 1.6e-73 273.5
Cmu08g1563 . 1 372 Core Cell Cycle Gene Families AT1G47210 59.4 4.7e-124 441.4
Cmu05g2098 . 204 577 Core Cell Cycle Gene Families AT1G47210 54.4 1.1e-112 403.7
Cmu09g0226 . 226 498 Core Cell Cycle Gene Families AT1G47210 51.8 7.4e-77 284.6
Cmu05g1751 . 208 477 Core Cell Cycle Gene Families AT1G47210 52.2 1.3e-76 283.9
Cmu08g1228 . 283 549 Core Cell Cycle Gene Families AT1G47210 50.6 6.0e-71 265.0
Cmu05g2098 . 297 578 Core Cell Cycle Gene Families AT1G47220 59.2 4.0e-95 345.1
Cmu08g1563 . 78 372 Core Cell Cycle Gene Families AT1G47220 56.9 6.4e-93 337.8
Cmu05g1751 . 208 474 Core Cell Cycle Gene Families AT1G47220 51.7 6.3e-72 268.1
Cmu05g2098 . 204 577 Core Cell Cycle Gene Families AT1G47230 57.1 2.8e-116 415.6
Cmu08g1563 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.1 1.2e-114 410.2
Cmu02g0698 . 66 352 Core Cell Cycle Gene Families AT1G47230 54.0 1.1e-77 287.3
Cmu08g0545 . 219 500 Core Cell Cycle Gene Families AT1G47230 50.5 1.2e-76 283.9
Cmu09g0226 . 228 498 Core Cell Cycle Gene Families AT1G47230 52.0 1.3e-73 273.9
Cmu05g1751 . 209 474 Core Cell Cycle Gene Families AT1G47230 52.0 2.4e-72 269.6
Cmu04g0623 . 1 449 Core Cell Cycle Gene Families AT4G37490 53.8 9.3e-116 414.1
Cmu04g0623 . 1 342 Core Cell Cycle Gene Families AT5G06150 53.6 6.9e-82 301.2
Cmu02g2241 . 847 1049 Core Cell Cycle Gene Families AT5G06150 63.2 4.9e-64 241.9
Cmu01g2031 . 170 344 Core Cell Cycle Gene Families AT5G06150 54.3 1.0e-45 181.0
Cmu04g0623 . 6 406 Core Cell Cycle Gene Families AT3G11520 57.6 3.9e-105 378.6
Cmu01g2031 . 171 397 Core Cell Cycle Gene Families AT3G11520 52.4 6.9e-62 235.0
Cmu02g2241 . 758 1156 Core Cell Cycle Gene Families AT2G26760 53.3 2.4e-107 386.0
Cmu01g2031 . 8 440 Core Cell Cycle Gene Families AT2G17620 60.0 4.7e-128 454.9
Cmu11g1856 . 167 566 Core Cell Cycle Gene Families AT2G17620 52.2 7.4e-105 377.9
Cmu01g2031 . 24 397 Core Cell Cycle Gene Families AT4G35620 58.7 2.1e-103 372.9
Cmu11g1856 . 160 523 Core Cell Cycle Gene Families AT4G35620 53.4 1.3e-89 327.0
Cmu02g2241 . 882 1108 Core Cell Cycle Gene Families AT4G35620 50.9 4.0e-54 209.1
Cmu11g1856 . 131 566 Core Cell Cycle Gene Families AT1G20610 63.1 1.2e-142 503.4
Cmu01g2031 . 1 440 Core Cell Cycle Gene Families AT1G20610 57.0 3.0e-122 435.6
Cmu11g1856 . 131 463 Core Cell Cycle Gene Families AT1G76310 63.8 1.7e-104 376.3
Cmu01g2031 . 1 336 Core Cell Cycle Gene Families AT1G76310 53.5 6.9e-82 301.2
Cmu02g2241 . 878 1045 Core Cell Cycle Gene Families AT1G76310 52.4 5.9e-41 165.2
Cmu09g1973 . 12 329 Core Cell Cycle Gene Families AT1G70210 65.6 3.2e-111 398.7
Cmu05g2557 . 1 327 Core Cell Cycle Gene Families AT1G70210 63.3 4.5e-105 378.3
Cmu01g1791 . 41 335 Core Cell Cycle Gene Families AT2G22490 54.9 3.9e-83 305.4
Cmu05g1129 . 14 336 Core Cell Cycle Gene Families AT4G34160 52.4 6.1e-79 291.6
Cmu08g1552 . 47 322 Core Cell Cycle Gene Families AT4G34160 50.5 9.1e-67 251.1
Cmu02g0662 . 59 292 Core Cell Cycle Gene Families AT4G34160 52.6 2.6e-61 233.0
Cmu05g2087 . 71 318 Core Cell Cycle Gene Families AT5G67260 51.4 5.4e-65 245.4
Cmu01g1791 . 56 275 Core Cell Cycle Gene Families AT5G65420 60.3 1.1e-69 260.4
Cmu08g1090 . 131 330 Core Cell Cycle Gene Families AT5G65420 55.9 5.4e-61 231.5
Cmu01g1791 . 54 233 Core Cell Cycle Gene Families AT5G10440 59.1 7.3e-56 214.2
Cmu08g1090 . 126 304 Core Cell Cycle Gene Families AT5G10440 53.9 9.3e-51 197.2
Cmu01g1601 . 1 277 Core Cell Cycle Gene Families AT5G27620 67.1 4.3e-104 374.8
Cmu01g1347 . 1 86 Core Cell Cycle Gene Families AT2G27960 91.9 7.4e-44 172.9
Cmu02g2156 . 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 1.1e-42 169.1
Cmu01g1347 . 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 1.4e-39 158.7
Cmu02g2156 . 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 4.0e-39 157.1
Cmu05g2744 . 283 1301 Core Cell Cycle Gene Families AT3G12280 71.9 0.0e+00 1411.7
Cmu09g0583 . 2 486 Core Cell Cycle Gene Families AT1G02970 59.9 1.2e-159 560.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012604 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 29