Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2087 ATGAGAAACTATAGAATGGCGAAACGGCATTGTTACCCACTATCAATTGCACATTCAATTTCAGGTCACCAGAATTCTTCACTTCTTCTTGATTCTCTCTACTGCTTTGAAGAGGAGCTTGGAGATGGCCATTCCCAACCAAAGGTCGAAGCTTTCTCAATCAATGTTAACATCAATTCCCCAAACTCTGTGTTCTTGTCGGACAGAGACTTTCTCTGGGAAGACGAGGAATTGGTGTCTCTGTTCTCAAAGGAGAACAAAAATAAGCTCCACAACATTCTCCCACACAATCCTTCTCTAACTGCAGCTCGCTCCAAGGCGGTTGAATGGATTCTCAAGGTCAATTCCCATTACTCTTTCACTGCCCTCACCGCCGTTTTGGCTGTTGATTATGTCGATAGGTTTCTCTCCAGCCCCCATTTTCAGATTGACAAGCCATGGATGACCCATCTCACCGCCATTGCTTCTTTATCTCTCGCTGCTAAAGTGGAGGAAACCCAAGTCCCCCTTCTTTTAGACCTCCAGGTGGAGGAAAATGAGTACTTTTTCGAAGCTAAGACCATTACAAGAATGGAGATTCTTGTTCTCTCTACGCTTCTTTGGAGAATGAATCCAGTGAACCCACTTTCCTTTCTGGACTATATTGTAAGACGCCTCGGTTTCAAGGACCAGCTCTGTTCTGAATTCCTCTGTAGATGTGAAAGATTACTTCTCTCTGTCATTATAGATTGTAGATTCGTATGTTTTCTTCCATCTGTAATAGCAACCGCCATTATTTTTCAAGTTATCAACGACATAGAACCCCTAGTCGCCGCAAAATACCAGGATCAGCTTCTGGGTATTCTTCAAATCGACAAGGATAAAATGGAGGATTGCTCACGATTCATCTTAGAGGCTTCATCGAGAGGACACAAACACGAGTGGAAGAATAAACAAAGATTTGGTTTAGTCGACATGTCGTGCAGCTCAGATGATGGGAATAGGAATGTGGACATTGTCGTGTCCTCGCCGGAGACAGCAACTAAGAAGAGAAAAATTGATGAACAGCCACCGTAG 1056 43.56 MRNYRMAKRHCYPLSIAHSISGHQNSSLLLDSLYCFEEELGDGHSQPKVEAFSINVNINSPNSVFLSDRDFLWEDEELVSLFSKENKNKLHNILPHNPSLTAARSKAVEWILKVNSHYSFTALTAVLAVDYVDRFLSSPHFQIDKPWMTHLTAIASLSLAAKVEETQVPLLLDLQVEENEYFFEAKTITRMEILVLSTLLWRMNPVNPLSFLDYIVRRLGFKDQLCSEFLCRCERLLLSVIIDCRFVCFLPSVIATAIIFQVINDIEPLVAAKYQDQLLGILQIDKDKMEDCSRFILEASSRGHKHEWKNKQRFGLVDMSCSSDDGNRNVDIVVSSPETATKKRKIDEQPP 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30474705 30476022 + CmPI595203_05g020870.1 Cmu05g2087 417001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2087 351 Gene3D - 101 204 - -
Cmu05g2087 351 FunFam D6-type cyclin 87 204 - -
Cmu05g2087 351 Gene3D - 205 293 - -
Cmu05g2087 351 CDD CYCLIN_AtCycD-like_rpt1 103 201 - -
Cmu05g2087 351 SUPERFAMILY Cyclin-like 73 204 IPR036915 -
Cmu05g2087 351 CDD CYCLIN_AtCycD-like_rpt2 206 292 - -
Cmu05g2087 351 SMART cyclin_7 109 197 IPR013763 -
Cmu05g2087 351 PANTHER CYCLINS 76 262 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cmu05g2087 351 SMART Cyclin_C_2 206 323 IPR004367 -
Cmu05g2087 351 FunFam CYCLIN D32 205 294 - -
Cmu05g2087 351 Pfam Cyclin, N-terminal domain 86 204 IPR006671 -
Cmu05g2087 351 Pfam Cyclin, C-terminal domain 206 307 IPR004367 -
Cmu05g2087 351 SUPERFAMILY Cyclin-like 207 302 IPR036915 -
Cmu05g2087 351 ProSitePatterns Cyclins signature. 104 135 IPR048258 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0662 Cmu-Chr2:6588004 Cmu05g2087 Cmu-Chr5:30474705 1.50E-58 dispersed
Cmu05g2087 Cmu-Chr5:30474705 Cmu08g1090 Cmu-Chr8:23201762 2.50E-34 dispersed
Cmu01g1656 Cmu-Chr1:30302140 Cmu05g2087 Cmu-Chr5:30474705 5.70E-60 wgd
Cmu05g2087 Cmu-Chr5:30474705 Cmu08g1552 Cmu-Chr8:27353605 3.40E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2087 K14505 - csv:101218302 578.556