Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2098 ATGGGTTCATGTGAGGCAGCGGTGGTAGCAATGAGCATGGCAAAAAGCAGCGAATCTCAGTTTCCGGATCTTAGGAAGCAGCTTAGGGCATTTGAAAGCGATTCGTCGGAGATCATCACGCTCTGCGAGGCGGAATATGTGGAGAAAATCCTCGAGGAAACCTTGAGGAAATTGCTTGTGCACAAGCAATTGTTCTTGCTCCAGAAGCAGTGCAATTCCTCTGCAACTTCCGCGGAACTTTTACGCAGAAAGAATCGTCGCGGTTCTGTGATTCAGCAGGTTAATCAGCCACTGCAATTGCCTTTGCTTTCTCCGGTGAGCTCTGAACATTTAAGAGCGACGTTCTCCCCCAATTTGTCTCCACTGGCAATCCGCTCCCTGATCGAGGCCGTTCCGACGAAGTGCCCTCTATCCCACCAATCCCTAGAAAACTCGTCGATTGTTCCCGACGGCGATAACAGCGGTCCTGGAAACCGGCGAACCCTCGGAGTTGCCGGGCAAAAACTTGGGCTGGGCCAACCAATGTGGGGGCGTGGCCACCCGAAAAGCTGCTCTCTTTTAACTTTACATCGTGTCATTGGGATACATATCCCAGGTCGCACTGAAACTATGGCGGATAAGGAGAATATATTTCGATTTACTAGGGGTTCTAAGAAGAGGGCCGCCGAAGCCGCTACCCCCGACGACCGCTCTGCTAACAAGAAGAGAGTCGTTCTTGGAGAGCTCCCTATTTTACAGAATGCTACTTCTTCCGTCGATCGTAAGTCCAGGTCTAGAGCCACCAGGCAGAGGCGGAGAGTAAAATCAAGGGATACTGCCGGCACAAGTGCTGCTGCTGCTGCTCCTGAAATCAATACACTTCCGGAAGGCGATGTCAAGTTATCAGATGAGGGCAATTCGGAAGACCCGCAAATGTGCAGGGTTTACGCCTCTGATATTTATGAATATCTTCGCGCAATGGAGACTGATCCAAGAAGAAGACCCTTACCAGATTACATCGGGAGGGTACAAAAGGATATTAGTGCCAATATGAGGGGAATTCTGGTGGATTGGTTGGTTGAAGTTGCAGAAGAATACAAACTAGTTTCAGATACTCTTTACCTCTCTATTTCATATGTAGACAGATACTTATCTCTAAATGAAATCAGCAGGCAAAAACTTCAGTTGCTGGGCGTTTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATCAGTCCTCCACATGTTGAAGAATTTGTTTATATCACAGACAATACCTACAATAGAGAAGAGGTGGTTGAGATGGAAGCTGAAATATTGAAGTCACTAGAATTTGAACTTGGAAATCCCACAATAAAGACGTTTTTAAGGAGATTCACAATGATTGCTCAAGAGACTTATGAGTTTAATACTTTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTCAAATTCTTACCGTCTCTCATTGCTGCATCTGTCATATTTCTAGCACGATTTATGATCCAACCCAAGAAGCATCCTTGGACCTCCAGGTTGGAGCATTTTACTGGATATAAGCCAGCTGATATCAAAGATTGCGTTCTACTTGTACATGATTTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCTATAAGGGAGAAATACAAACAACACAAGTTCAAATTTGTATCTGTCCTGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTTGTCTACTCGATTGCATTTAAGCTTGCACTTTTCTTTAACCTTCTATACTGA 1782 45.23 MGSCEAAVVAMSMAKSSESQFPDLRKQLRAFESDSSEIITLCEAEYVEKILEETLRKLLVHKQLFLLQKQCNSSATSAELLRRKNRRGSVIQQVNQPLQLPLLSPVSSEHLRATFSPNLSPLAIRSLIEAVPTKCPLSHQSLENSSIVPDGDNSGPGNRRTLGVAGQKLGLGQPMWGRGHPKSCSLLTLHRVIGIHIPGRTETMADKENIFRFTRGSKKRAAEAATPDDRSANKKRVVLGELPILQNATSSVDRKSRSRATRQRRRVKSRDTAGTSAAAAAPEINTLPEGDVKLSDEGNSEDPQMCRVYASDIYEYLRAMETDPRRRPLPDYIGRVQKDISANMRGILVDWLVEVAEEYKLVSDTLYLSISYVDRYLSLNEISRQKLQLLGVSAMLIASKYEEISPPHVEEFVYITDNTYNREEVVEMEAEILKSLEFELGNPTIKTFLRRFTMIAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLIAASVIFLARFMIQPKKHPWTSRLEHFTGYKPADIKDCVLLVHDLYLSRRGGALAAIREKYKQHKFKFVSVLPSPPEIPIPYFEDVVYSIAFKLALFFNLLY 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30546512 30552279 - CmPI595203_05g020980.1 Cmu05g2098 417012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2098 593 Gene3D - 326 441 - -
Cmu05g2098 593 FunFam Cyclin A1 430 562 - -
Cmu05g2098 593 SMART cyclin_7 447 535 IPR013763 -
Cmu05g2098 593 SMART cyclin_7 350 434 IPR013763 -
Cmu05g2098 593 Pfam Cyclin, C-terminal domain 443 565 IPR004367 -
Cmu05g2098 593 ProSitePatterns Cyclins signature. 345 376 IPR048258 -
Cmu05g2098 593 PANTHER CYCLINS 296 554 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cmu05g2098 593 SUPERFAMILY Cyclin-like 443 568 IPR036915 -
Cmu05g2098 593 MobiDBLite consensus disorder prediction 216 290 - -
Cmu05g2098 593 SUPERFAMILY Cyclin-like 301 440 IPR036915 -
Cmu05g2098 593 Gene3D - 312 562 - -
Cmu05g2098 593 CDD CYCLIN_AtCycA_like_rpt1 302 439 - -
Cmu05g2098 593 MobiDBLite consensus disorder prediction 216 236 - -
Cmu05g2098 593 Pfam Cyclin, N-terminal domain 312 440 IPR006671 -
Cmu05g2098 593 FunFam Mitotic cyclin 6 328 428 - -
Cmu05g2098 593 CDD CYCLIN_AtCycA-like_rpt2 443 557 - -
Cmu05g2098 593 SMART Cyclin_C_2 443 566 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0698 Cmu-Chr2:7118126 Cmu05g2098 Cmu-Chr5:30546512 7.90E-84 dispersed
Cmu05g2098 Cmu-Chr5:30546512 Cmu08g0545 Cmu-Chr8:17436528 1.10E-82 dispersed
Cmu05g2098 Cmu-Chr5:30546512 Cmu08g1563 Cmu-Chr8:27421620 1.70E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2098 K06627 - csv:101207493 662.914